Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   R3J34_RS11205 Genome accession   NZ_CP136975
Coordinates   2295236..2297245 (-) Length   669 a.a.
NCBI ID   WP_004086393.1    Uniprot ID   B0U4J3
Organism   Xylella fastidiosa subsp. multiplex strain CFBP8070     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2290236..2302245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3J34_RS11175 (R3J34_11165) - 2290543..2292198 (+) 1656 WP_154415244.1 lambda-exonuclease family protein -
  R3J34_RS11180 (R3J34_11170) - 2292549..2293178 (+) 630 WP_154415270.1 Bro-N domain-containing protein -
  R3J34_RS11185 (R3J34_11175) - 2293229..2293675 (+) 447 WP_375732335.1 single-stranded DNA-binding protein -
  R3J34_RS11190 (R3J34_11180) - 2293734..2294054 (+) 321 WP_038229933.1 helix-turn-helix domain-containing protein -
  R3J34_RS11195 (R3J34_11185) - 2294462..2295106 (+) 645 WP_230577731.1 tyrosine-type recombinase/integrase -
  R3J34_RS11205 (R3J34_11195) uvrB 2295236..2297245 (-) 2010 WP_004086393.1 excinuclease ABC subunit UvrB Machinery gene
  R3J34_RS11210 (R3J34_11200) - 2297400..2297987 (+) 588 WP_004086395.1 GspH/FimT family pseudopilin -
  R3J34_RS11215 (R3J34_11205) - 2298451..2298957 (-) 507 WP_027700520.1 hypothetical protein -
  R3J34_RS11220 (R3J34_11210) dapA 2298977..2299885 (-) 909 WP_154415240.1 4-hydroxy-tetrahydrodipicolinate synthase -
  R3J34_RS11225 (R3J34_11215) - 2300038..2300613 (+) 576 WP_011098233.1 glycine cleavage system protein R -
  R3J34_RS11230 (R3J34_11220) - 2300660..2301139 (+) 480 WP_004086402.1 peroxiredoxin -

Sequence

Protein


Download         Length: 669 a.a.        Molecular weight: 75470.09 Da        Isoelectric Point: 5.1893

>NTDB_id=817138 R3J34_RS11205 WP_004086393.1 2295236..2297245(-) (uvrB) [Xylella fastidiosa subsp. multiplex strain CFBP8070]
MTGLFQLVSSYSPSGDQPAAVQKLVTNFHAGIAKQVLLGVTGSGKTYTIANVVEQIQKPTLVMAPNKTLAAQLYGEFKAF
FPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSSINEYIEQMRLAATKALLSRSDVLVVATVSAIYGLGAPEDYLSLRLI
LSLGEHIEQRQLIRHLTELQYTRNELDLVRGSFRVRGEVVDVFPAESEMEALRIELFDGEIESLSLFDPLTGQTVRKLQR
FSVYPKTHYATTRERTLSAVDTIKDELKEYLELLYGRNKLVEAQRLAQRTQFDLEMMAEVGYCNGIENYSRHLTGKAPGE
PPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVEFGFRLPSALDNRPLRFEEWEVRSPRSIYVSATPGSYE
FRESAGEVIELLVRPTGLIDPEIEIRPVATQVDDLISQINACIKLGDRVLVTTLTKRMAENLTEYLSEQGIRIRYLHSEI
DTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAARSVRGRAILYADKVTRS
MRAAIDETERRRQKQKEYNAENGIVPKSVVRPISDILEGARDGVEVKSKGKGRRVDEVPADYGALNQAEIAAQMKMLEQQ
MYQHARDLEFEDAARIRDQIQRLREAGLG

Nucleotide


Download         Length: 2010 bp        

>NTDB_id=817138 R3J34_RS11205 WP_004086393.1 2295236..2297245(-) (uvrB) [Xylella fastidiosa subsp. multiplex strain CFBP8070]
ATGACAGGTTTGTTTCAGCTTGTTTCTTCATACTCTCCTTCTGGGGATCAGCCGGCGGCTGTACAGAAGCTAGTCACTAA
TTTCCATGCTGGCATTGCTAAGCAGGTGTTGCTTGGCGTGACTGGTTCTGGGAAGACTTACACCATCGCTAATGTGGTTG
AGCAGATTCAGAAGCCAACTCTGGTGATGGCGCCAAACAAGACGTTGGCAGCACAGCTTTACGGGGAATTCAAGGCGTTC
TTCCCGCACAATGCGGTGGAATATTTTGTCAGCTACTATGACTACTATCAGCCTGAGGCGTATGTTCCAGCCTCGGACAC
GTTCATTGAAAAGGACAGTTCTATCAATGAATACATTGAACAGATGCGTTTGGCTGCAACGAAGGCTTTGCTGTCACGTT
CTGATGTGTTGGTGGTGGCGACTGTGTCGGCGATTTATGGTTTGGGTGCGCCTGAGGATTATCTTTCGTTACGTTTGATT
TTGTCGCTGGGTGAGCATATTGAGCAGCGGCAATTGATCAGGCATCTCACTGAGTTGCAGTACACACGTAACGAGTTGGA
TTTGGTGCGTGGTAGTTTCCGTGTACGTGGTGAGGTTGTTGATGTATTCCCGGCTGAGTCAGAGATGGAGGCGCTGCGCA
TTGAGTTGTTTGATGGTGAGATAGAAAGTTTGAGCTTGTTCGATCCGCTTACCGGCCAGACGGTACGTAAGTTGCAACGT
TTTAGTGTTTACCCTAAAACCCACTATGCAACTACGCGTGAACGTACGCTCAGTGCCGTTGATACGATCAAGGATGAGCT
GAAAGAGTATCTAGAACTTCTGTATGGGCGGAATAAGTTGGTTGAGGCGCAACGTTTAGCTCAGCGTACTCAGTTTGACT
TAGAGATGATGGCCGAGGTTGGTTATTGCAATGGTATTGAAAATTATTCTCGTCACTTAACTGGTAAGGCTCCGGGGGAA
CCTCCACCGACGTTGTTCGATTATCTGCCTCCGGATGCGCTACTGGTCATTGATGAGTCGCACGTGACAATTCCGCAGAT
CGGTGCGATGTTCAAGGGGGACCGTTCCCGTAAAGAAACGCTGGTGGAATTTGGTTTCCGTTTACCATCGGCGTTAGACA
ATCGGCCGCTTCGCTTTGAGGAATGGGAAGTGCGTTCGCCGCGTAGCATTTACGTCTCGGCGACTCCAGGATCATATGAG
TTCCGCGAGTCCGCAGGTGAAGTCATAGAGTTGCTGGTGCGTCCGACTGGGTTGATTGATCCTGAGATAGAAATCCGTCC
GGTTGCGACCCAGGTGGATGATCTGATTTCCCAGATCAATGCGTGTATCAAGTTAGGTGATCGGGTTTTGGTCACCACGT
TAACTAAGCGTATGGCTGAGAACCTCACTGAATATTTGAGCGAGCAGGGTATCCGGATACGTTATTTGCATTCGGAAATC
GATACGGTAGAACGTGTGGAGATCATCCGTGATTTGCGTCTTGGTAAATTCGATGTGCTGGTTGGTATCAATCTTCTACG
TGAGGGTTTGGATATGCCGGAGGTGTCGTTGGTGGCCATTCTTGACGCTGATAAAGAGGGGTTTTTGCGTTCGACCAGTT
CACTGATTCAGACGATTGGTCGTGCCGCACGCAGTGTGCGCGGTAGGGCAATCTTGTATGCCGATAAAGTGACTCGTTCA
ATGCGCGCTGCAATTGATGAAACCGAGCGACGTCGACAAAAGCAGAAGGAATACAATGCTGAGAACGGTATTGTTCCGAA
ATCCGTTGTACGGCCCATTAGCGACATTTTGGAGGGTGCGCGAGATGGTGTCGAGGTGAAGAGCAAGGGGAAGGGGCGCA
GAGTTGATGAGGTTCCCGCTGACTATGGTGCGCTTAATCAAGCTGAGATTGCCGCGCAGATGAAAATGCTGGAGCAACAG
ATGTACCAGCATGCGCGTGATTTGGAGTTTGAGGATGCGGCGCGTATTCGCGATCAAATTCAGCGGCTTAGGGAGGCTGG
TCTGGGTTAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(552-593)

Type III restriction enzyme, res subunit (ResIII)

(16-92)

UvrB interaction domain (UvrB_inter)

(160-249)

Helicase conserved C-terminal domain (Helicase_C)

(441-544)

UvrB/uvrC motif (UVR)

(637-665)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0U4J3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.183

98.057

0.541
  uvrB Streptococcus pneumoniae R6

55.03

98.057

0.54
  uvrB Streptococcus pneumoniae D39

55.03

98.057

0.54