Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   R3J29_RS08625 Genome accession   NZ_CP136974
Coordinates   1930075..1932084 (-) Length   669 a.a.
NCBI ID   WP_004086393.1    Uniprot ID   B0U4J3
Organism   Xylella fastidiosa subsp. multiplex strain CFBP8075     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1925075..1937084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3J29_RS08585 (R3J29_08580) - 1925228..1925626 (+) 399 WP_225621886.1 hypothetical protein -
  R3J29_RS08590 (R3J29_08585) - 1926072..1926290 (+) 219 WP_027700173.1 S24 family peptidase -
  R3J29_RS08595 (R3J29_08590) - 1926333..1926827 (+) 495 WP_012338054.1 hypothetical protein -
  R3J29_RS08600 (R3J29_08595) - 1927234..1928235 (-) 1002 WP_375731818.1 RNA-guided endonuclease InsQ/TnpB family protein -
  R3J29_RS08605 (R3J29_08600) - 1928235..1928489 (-) 255 Protein_1676 recombinase family protein -
  R3J29_RS08610 (R3J29_08605) - 1928528..1928962 (+) 435 WP_004085904.1 hypothetical protein -
  R3J29_RS08615 (R3J29_08610) - 1929386..1929865 (+) 480 WP_228304101.1 tyrosine-type recombinase/integrase -
  R3J29_RS08625 (R3J29_08620) uvrB 1930075..1932084 (-) 2010 WP_004086393.1 excinuclease ABC subunit UvrB Machinery gene
  R3J29_RS08630 (R3J29_08625) - 1932239..1932826 (+) 588 WP_004086395.1 GspH/FimT family pseudopilin -
  R3J29_RS08635 (R3J29_08630) - 1933290..1933796 (-) 507 WP_027700520.1 hypothetical protein -
  R3J29_RS08640 (R3J29_08635) dapA 1933816..1934724 (-) 909 WP_071869637.1 4-hydroxy-tetrahydrodipicolinate synthase -
  R3J29_RS08645 (R3J29_08640) - 1934877..1935452 (+) 576 WP_011098233.1 glycine cleavage system protein R -
  R3J29_RS08650 (R3J29_08645) - 1935499..1935978 (+) 480 WP_071869622.1 peroxiredoxin -

Sequence

Protein


Download         Length: 669 a.a.        Molecular weight: 75470.09 Da        Isoelectric Point: 5.1893

>NTDB_id=817080 R3J29_RS08625 WP_004086393.1 1930075..1932084(-) (uvrB) [Xylella fastidiosa subsp. multiplex strain CFBP8075]
MTGLFQLVSSYSPSGDQPAAVQKLVTNFHAGIAKQVLLGVTGSGKTYTIANVVEQIQKPTLVMAPNKTLAAQLYGEFKAF
FPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSSINEYIEQMRLAATKALLSRSDVLVVATVSAIYGLGAPEDYLSLRLI
LSLGEHIEQRQLIRHLTELQYTRNELDLVRGSFRVRGEVVDVFPAESEMEALRIELFDGEIESLSLFDPLTGQTVRKLQR
FSVYPKTHYATTRERTLSAVDTIKDELKEYLELLYGRNKLVEAQRLAQRTQFDLEMMAEVGYCNGIENYSRHLTGKAPGE
PPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVEFGFRLPSALDNRPLRFEEWEVRSPRSIYVSATPGSYE
FRESAGEVIELLVRPTGLIDPEIEIRPVATQVDDLISQINACIKLGDRVLVTTLTKRMAENLTEYLSEQGIRIRYLHSEI
DTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAARSVRGRAILYADKVTRS
MRAAIDETERRRQKQKEYNAENGIVPKSVVRPISDILEGARDGVEVKSKGKGRRVDEVPADYGALNQAEIAAQMKMLEQQ
MYQHARDLEFEDAARIRDQIQRLREAGLG

Nucleotide


Download         Length: 2010 bp        

>NTDB_id=817080 R3J29_RS08625 WP_004086393.1 1930075..1932084(-) (uvrB) [Xylella fastidiosa subsp. multiplex strain CFBP8075]
ATGACAGGTTTGTTTCAGCTTGTTTCTTCATACTCTCCTTCTGGGGATCAGCCGGCGGCTGTACAGAAGCTAGTCACTAA
TTTCCATGCTGGCATTGCTAAGCAGGTGTTGCTTGGCGTGACTGGTTCTGGGAAGACTTACACCATCGCTAATGTGGTTG
AGCAGATTCAGAAGCCAACTCTGGTGATGGCGCCAAACAAGACGTTGGCAGCACAGCTTTACGGGGAATTCAAGGCGTTC
TTCCCGCACAATGCGGTGGAATATTTTGTCAGCTACTATGACTACTATCAGCCTGAGGCGTATGTTCCAGCCTCGGACAC
GTTCATTGAAAAGGACAGTTCTATCAATGAATACATTGAACAGATGCGTTTGGCTGCAACGAAGGCTTTGCTGTCACGTT
CTGATGTGTTGGTGGTGGCGACTGTGTCGGCGATTTATGGTTTGGGTGCGCCTGAGGATTATCTTTCGTTACGTTTGATT
TTGTCGCTGGGTGAGCATATTGAGCAGCGGCAATTGATCAGGCATCTCACTGAGTTGCAGTACACACGTAACGAGTTGGA
TTTGGTGCGTGGTAGTTTCCGTGTACGTGGTGAGGTTGTTGATGTATTCCCGGCTGAGTCAGAGATGGAGGCGCTGCGCA
TTGAGTTGTTTGATGGTGAGATAGAAAGTTTGAGCTTGTTCGATCCGCTTACCGGCCAGACGGTACGTAAGTTGCAACGT
TTTAGTGTTTACCCTAAAACCCACTATGCAACTACGCGTGAACGTACGCTCAGTGCCGTTGATACGATCAAGGATGAGCT
GAAAGAGTATCTAGAACTTCTGTATGGGCGGAATAAGTTGGTTGAGGCGCAACGTTTAGCTCAGCGTACTCAGTTTGACT
TAGAGATGATGGCCGAGGTTGGTTATTGCAATGGTATTGAAAATTATTCTCGTCACTTAACTGGTAAGGCTCCGGGGGAA
CCTCCACCGACGTTGTTCGATTATCTGCCTCCGGATGCGCTACTGGTCATTGATGAGTCGCACGTGACAATTCCGCAGAT
CGGTGCGATGTTCAAGGGGGACCGTTCCCGTAAAGAAACGCTGGTGGAATTTGGTTTCCGTTTACCATCGGCGTTAGACA
ATCGGCCGCTTCGCTTTGAGGAATGGGAAGTGCGTTCGCCGCGTAGCATTTACGTCTCGGCGACTCCAGGATCATATGAG
TTCCGCGAGTCCGCAGGTGAAGTCATAGAGTTGCTGGTGCGTCCGACTGGGTTGATTGATCCTGAGATAGAAATCCGTCC
GGTTGCGACCCAGGTGGATGATCTGATTTCCCAGATCAATGCGTGTATCAAGTTAGGTGATCGGGTTTTGGTCACCACGT
TAACTAAGCGTATGGCTGAGAACCTCACTGAATATTTGAGCGAGCAGGGTATCCGGATACGTTATTTGCATTCGGAAATC
GATACGGTAGAACGTGTGGAGATCATCCGTGATTTGCGTCTTGGTAAATTCGATGTGCTGGTTGGTATCAATCTTCTACG
TGAGGGTTTGGATATGCCGGAGGTGTCGTTGGTGGCCATTCTTGACGCTGATAAAGAGGGGTTTTTGCGTTCGACCAGTT
CACTGATTCAGACGATTGGTCGTGCCGCACGCAGTGTGCGCGGTAGGGCAATCTTGTATGCCGATAAAGTGACTCGTTCA
ATGCGCGCTGCAATTGATGAAACCGAGCGACGTCGACAAAAGCAGAAGGAATACAATGCTGAGAACGGTATTGTTCCGAA
ATCCGTTGTACGGCCCATTAGCGACATTTTGGAGGGTGCGCGAGATGGTGTCGAGGTGAAGAGCAAGGGGAAGGGGCGCA
GAGTTGATGAGGTTCCCGCTGACTATGGTGCGCTTAATCAAGCTGAGATTGCCGCGCAGATGAAAATGCTGGAGCAACAG
ATGTACCAGCATGCGCGTGATTTGGAGTTTGAGGATGCGGCGCGTATTCGCGATCAAATTCAGCGGCTTAGGGAGGCTGG
TCTGGGTTAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(552-593)

Type III restriction enzyme, res subunit (ResIII)

(16-92)

UvrB interaction domain (UvrB_inter)

(160-249)

Helicase conserved C-terminal domain (Helicase_C)

(441-544)

UvrB/uvrC motif (UVR)

(637-665)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0U4J3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.183

98.057

0.541
  uvrB Streptococcus pneumoniae R6

55.03

98.057

0.54
  uvrB Streptococcus pneumoniae D39

55.03

98.057

0.54