Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   R8563_RS02445 Genome accession   NZ_AP026917
Coordinates   479579..480628 (+) Length   349 a.a.
NCBI ID   WP_000653771.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700007     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 474579..485628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8563_RS02415 (PC0007_04670) - 476016..476369 (+) 354 WP_000115730.1 hypothetical protein -
  R8563_RS02420 (PC0007_04680) dnaJ 476574..477710 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  R8563_RS02425 - 477739..477915 (-) 177 WP_001810526.1 hypothetical protein -
  R8563_RS02430 (PC0007_04690) - 478076..478363 (-) 288 WP_000777753.1 hypothetical protein -
  R8563_RS02435 (PC0007_04700) - 478373..478783 (-) 411 WP_001278304.1 HIT family protein -
  R8563_RS02440 (PC0007_04710) pptA 478851..479582 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  R8563_RS02445 (PC0007_04720) pptB 479579..480628 (+) 1050 WP_000653771.1 ABC transporter permease Regulator
  R8563_RS02450 (PC0007_04730) - 480796..481125 (-) 330 WP_000132572.1 hypothetical protein -
  R8563_RS02455 (PC0007_04740) - 481401..481739 (+) 339 WP_000682121.1 LytTR family DNA-binding domain-containing protein -
  R8563_RS02460 (PC0007_04750) comE/blpR 481744..482481 (+) 738 WP_001219126.1 response regulator transcription factor Regulator
  R8563_RS02465 (PC0007_04760) - 482495..483835 (+) 1341 WP_317636774.1 sensor histidine kinase -
  R8563_RS02470 (PC0007_04770) blpC 483880..484035 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -
  R8563_RS02475 (PC0007_04780) - 484092..485453 (-) 1362 WP_001069067.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40556.62 Da        Isoelectric Point: 10.0008

>NTDB_id=81691 R8563_RS02445 WP_000653771.1 479579..480628(+) (pptB) [Streptococcus pneumoniae strain PZ900700007]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=81691 R8563_RS02445 WP_000653771.1 479579..480628(+) (pptB) [Streptococcus pneumoniae strain PZ900700007]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTATGTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTATTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTGGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47


Multiple sequence alignment