Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EPG46_RS04050 Genome accession   NZ_AP023219
Coordinates   874379..875008 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain M505     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 869379..880008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPG46_RS04030 ycbZ 869780..871540 (-) 1761 WP_000152888.1 Lon protease family protein -
  EPG46_RS04035 matP 871726..872178 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EPG46_RS04040 ompA 872254..873294 (-) 1041 WP_000750416.1 porin OmpA -
  EPG46_RS04045 sulA 873651..874160 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EPG46_RS04050 sxy/tfoX 874379..875008 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EPG46_RS04055 yccS 874971..877133 (-) 2163 WP_000875058.1 YccS family putative transporter -
  EPG46_RS04060 yccF 877143..877589 (-) 447 WP_001261235.1 YccF domain-containing protein -
  EPG46_RS04065 helD 877712..879766 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=81690 EPG46_RS04050 WP_000839153.1 874379..875008(+) (sxy/tfoX) [Escherichia coli strain M505]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=81690 EPG46_RS04050 WP_000839153.1 874379..875008(+) (sxy/tfoX) [Escherichia coli strain M505]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment