Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   R8563_RS00920 Genome accession   NZ_AP026917
Coordinates   171480..172073 (+) Length   197 a.a.
NCBI ID   WP_000271487.1    Uniprot ID   Q97SY4
Organism   Streptococcus pneumoniae strain PZ900700007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 166480..177073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8563_RS00900 (PC0007_01660) ribE 167662..168129 (-) 468 WP_001099502.1 6,7-dimethyl-8-ribityllumazine synthase -
  R8563_RS00905 (PC0007_01670) - 168130..169335 (-) 1206 WP_000456639.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  R8563_RS00910 (PC0007_01680) ribE 169355..169990 (-) 636 WP_000493842.1 riboflavin synthase -
  R8563_RS00915 (PC0007_01690) ribD 169975..171075 (-) 1101 WP_001284105.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  R8563_RS00920 (PC0007_01700) ruvA 171480..172073 (+) 594 WP_000271487.1 Holliday junction branch migration protein RuvA Machinery gene
  R8563_RS00925 (PC0007_01710) - 172083..172646 (+) 564 WP_000166608.1 DNA-3-methyladenine glycosylase I -
  R8563_RS00930 (PC0007_01720) - 172643..173320 (+) 678 WP_000987421.1 CPBP family intramembrane glutamic endopeptidase -
  R8563_RS00935 (PC0007_01730) - 173457..174487 (-) 1031 Protein_181 S66 peptidase family protein -
  R8563_RS00940 (PC0007_01750) - 174742..175425 (-) 684 WP_000078022.1 DUF1129 domain-containing protein -
  R8563_RS00945 (PC0007_01760) - 175437..176381 (-) 945 WP_000815629.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21606.10 Da        Isoelectric Point: 6.7338

>NTDB_id=81679 R8563_RS00920 WP_000271487.1 171480..172073(+) (ruvA) [Streptococcus pneumoniae strain PZ900700007]
MYAYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEAQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDDLPAKVAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=81679 R8563_RS00920 WP_000271487.1 171480..172073(+) (ruvA) [Streptococcus pneumoniae strain PZ900700007]
ATGTACGCATATTTAAAAGGAATCATTACCAAAATTACTGCCAAATACATTGTTCTTGAAACCAATGGTATTGGTTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTTAATCAGGAGGCTCAGATTTATGTGCATCAGGTTGTGCGTG
AGGACGCCCATTTGCTTTATGGATTTCGCTCAGAGGATGAGAAAAAGCTCTTTCTTAGTCTGATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCTGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CAGGAGATGACCTTCCTGCCAAGGTCGCAGTGCAAGCAAGTGCTGAAAACCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCTCTGGGCTACAAGGCAACAGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97SY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

100

100

1
  ruvA Streptococcus pneumoniae R6

99.492

100

0.995
  ruvA Streptococcus pneumoniae D39

99.492

100

0.995
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.806

100

0.416

Multiple sequence alignment