Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   RJD36_RS10520 Genome accession   NZ_CP136943
Coordinates   2076848..2078863 (-) Length   671 a.a.
NCBI ID   WP_117479725.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP082     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2071848..2083863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS10505 (RJD36_10505) - 2072253..2072636 (-) 384 WP_003062614.1 YdcP family protein -
  RJD36_RS10510 (RJD36_10510) - 2072652..2072978 (-) 327 WP_003059926.1 YdcP family protein -
  RJD36_RS10515 (RJD36_10515) - 2073214..2076264 (-) 3051 WP_317751262.1 SrtB-anchored collagen-binding adhesin -
  RJD36_RS10520 (RJD36_10520) recG/mmsA 2076848..2078863 (-) 2016 WP_117479725.1 ATP-dependent DNA helicase RecG Machinery gene
  RJD36_RS10525 (RJD36_10525) alr 2078950..2080056 (-) 1107 WP_003066300.1 alanine racemase -
  RJD36_RS10530 (RJD36_10530) acpS 2080113..2080472 (-) 360 WP_003066305.1 holo-ACP synthase -
  RJD36_RS10535 (RJD36_10535) - 2080594..2081649 (-) 1056 WP_003066308.1 3-deoxy-7-phosphoheptulonate synthase -
  RJD36_RS10540 (RJD36_10540) - 2081653..2082684 (-) 1032 WP_003066311.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 74617.63 Da        Isoelectric Point: 5.9101

>NTDB_id=816370 RJD36_RS10520 WP_117479725.1 2076848..2078863(-) (recG/mmsA) [Streptococcus pasteurianus strain WUSP082]
MNLQSSIVELKGIGAKSAEKFYKLDIYTIEDLLLYYPFRYEDFKSKSVSELADGEKAVITGTVVTPANVQYYGYKRNRLS
FKIKQGEAVIAISFFNQPYLADKVEIGSDIAIFGKWDALKSAVTGMKILAQVEDDMQPVYRVAQGISQNALVKAIKSAFE
IGAQNWLPENLPQVLLDKYRLLGRAQATAAMHFPKDLAEYKQALRRIKFEELFYFQMNLQALKADNKSEANGLAIAYDEQ
KVADKIAALPFTLTGGQRRSLDDILADMRSGGHMNRLLQGDVGSGKTVVASLAMYATYTAGFQSALMVPTEILAEQHFES
LTQLFPDLSIAILTSGMKTAAKQAALSAIADGSVDMIVGTHALIQDAVTYHRLGLVITDEQHRFGVNQRRVFREKGENPD
VLMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQLEVVLDWVKEELQKGAQAYVISPLIEESESLDLKN
AVALHEELSAYFADSATVALMHGRMKNDEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLR
GRVGRGDKQSYAILVANPKTQTGKERMKIMTETTDGFVLAEADLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEARR
VASQIVSKKDWQNNLQWQIVSQNLKDKGTFD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=816370 RJD36_RS10520 WP_117479725.1 2076848..2078863(-) (recG/mmsA) [Streptococcus pasteurianus strain WUSP082]
ATGAATTTACAATCATCAATTGTGGAATTAAAAGGAATAGGGGCTAAGTCGGCGGAAAAATTTTATAAGTTAGATATTTA
TACCATTGAAGATTTACTGCTGTACTATCCTTTTCGATATGAAGATTTTAAGAGTAAGAGTGTTTCAGAGCTTGCTGATG
GGGAAAAAGCTGTCATTACGGGAACGGTTGTGACACCTGCAAATGTGCAATATTATGGTTATAAGCGTAATCGTTTGTCG
TTTAAAATCAAGCAGGGCGAAGCGGTTATTGCGATTTCTTTTTTTAACCAGCCTTATTTAGCTGATAAAGTCGAGATTGG
CAGCGATATCGCGATTTTTGGAAAATGGGATGCCCTAAAATCAGCGGTGACTGGTATGAAAATTTTAGCGCAAGTTGAAG
ATGATATGCAGCCAGTTTACCGTGTTGCTCAAGGTATTTCACAAAATGCACTAGTCAAAGCTATCAAATCAGCTTTTGAA
ATTGGTGCTCAGAATTGGTTGCCTGAAAATTTACCGCAGGTGCTTTTGGACAAGTATCGTTTGTTAGGGCGTGCTCAAGC
AACGGCTGCTATGCACTTTCCGAAAGATTTAGCAGAGTATAAACAAGCACTTCGTCGGATAAAATTTGAAGAACTGTTCT
ATTTTCAAATGAATTTGCAAGCTTTAAAGGCAGACAATAAATCAGAAGCTAATGGTTTGGCGATTGCTTATGATGAGCAA
AAAGTTGCTGATAAGATTGCAGCTCTGCCATTTACCTTGACGGGTGGTCAAAGGCGGAGTCTTGATGATATTTTGGCGGA
TATGCGTTCTGGTGGTCATATGAATCGTCTCTTGCAAGGGGACGTTGGTTCTGGTAAGACGGTTGTGGCTAGTCTTGCCA
TGTATGCTACTTATACGGCAGGTTTTCAATCAGCTTTGATGGTGCCAACGGAAATTTTGGCGGAGCAGCATTTTGAAAGT
TTGACCCAGCTTTTTCCAGATTTGTCCATTGCAATTTTAACATCAGGGATGAAAACAGCAGCCAAACAAGCGGCACTTTC
GGCGATTGCGGATGGTTCGGTAGATATGATTGTTGGTACGCATGCGCTGATTCAAGATGCGGTAACTTACCACCGCTTGG
GGCTTGTCATTACTGATGAACAACACCGTTTTGGTGTCAATCAACGTCGTGTTTTCCGTGAAAAGGGCGAAAATCCAGAT
GTGCTCATGATGACTGCAACACCAATTCCACGGACACTTGCTATTACGGCATTTGGTGAAATGGACGTTTCGATTATTGA
TGAATTGCCTGCAGGACGCAAACCGATTATCACGCGTTGGGTTAAACATGAACAGTTGGAAGTTGTGCTTGATTGGGTCA
AAGAAGAATTGCAAAAAGGGGCACAAGCCTATGTGATTTCACCTTTAATTGAAGAATCTGAATCACTTGATTTGAAAAAT
GCTGTTGCCTTGCACGAGGAATTGTCAGCCTATTTTGCGGATAGTGCAACCGTAGCGCTCATGCATGGTCGCATGAAAAA
TGACGAAAAAGAAGCTATCATGCAAGATTTCAAGGCACAAAAAAGTCAGGTTTTGGTATCGACAACCGTCATTGAAGTTG
GTGTTAATGTCCCAAATGCGACCATTATGATTATTATGGATGCTGACCGATTTGGGCTTAGCCAGTTGCATCAGCTTCGT
GGACGAGTTGGGCGTGGAGATAAACAATCTTATGCTATTTTAGTCGCCAATCCCAAAACACAAACAGGAAAAGAGCGCAT
GAAAATCATGACAGAAACAACGGATGGTTTTGTTTTAGCAGAAGCCGACCTTAAAATGCGTGGTTCAGGTGAGATTTTCG
GCACACGCCAATCAGGAATTCCAGAATTCCAAGTGGCAGATATTGTCGAAGATTACAATATTCTCGAGGAAGCTAGACGC
GTTGCAAGTCAGATCGTTTCCAAAAAAGATTGGCAAAACAATTTACAATGGCAAATTGTTAGCCAAAATCTCAAAGACAA
AGGAACTTTTGATTAA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-666)

Helicase conserved C-terminal domain (Helicase_C)

(455-566)

RecG wedge domain (RecG_wedge)

(10-157)

DEAD/DEAH box helicase (DEAD)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

70.343

100

0.703
  recG/mmsA Streptococcus pneumoniae R36A

70.343

100

0.703
  recG Bacillus subtilis subsp. subtilis str. 168

49.183

100

0.493
  recG Neisseria meningitidis strain C311

39.237

97.615

0.383