Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RJD36_RS04545 Genome accession   NZ_CP136943
Coordinates   856382..858373 (+) Length   663 a.a.
NCBI ID   WP_003065493.1    Uniprot ID   E0PER4
Organism   Streptococcus pasteurianus strain WUSP082     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 851382..863373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS04525 (RJD36_04525) - 851558..851830 (-) 273 Protein_826 transposase -
  RJD36_RS04530 (RJD36_04530) - 851904..853009 (+) 1106 WP_249551291.1 IS3 family transposase -
  RJD36_RS04535 (RJD36_04535) - 853234..853974 (-) 741 WP_013852036.1 amino acid ABC transporter ATP-binding protein -
  RJD36_RS04540 (RJD36_04540) - 853974..856193 (-) 2220 WP_013852035.1 ABC transporter substrate-binding protein/permease -
  RJD36_RS04545 (RJD36_04545) uvrB 856382..858373 (+) 1992 WP_003065493.1 excinuclease ABC subunit UvrB Machinery gene
  RJD36_RS04550 (RJD36_04550) - 858464..858928 (+) 465 WP_003065491.1 8-oxo-dGTP diphosphatase -
  RJD36_RS04555 (RJD36_04555) - 859042..859878 (-) 837 WP_003065489.1 sugar ABC transporter permease -
  RJD36_RS04560 (RJD36_04560) - 859878..861245 (-) 1368 WP_061100426.1 carbohydrate ABC transporter permease -
  RJD36_RS04565 (RJD36_04565) - 861375..862631 (-) 1257 WP_003065481.1 extracellular solute-binding protein -

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 76066.94 Da        Isoelectric Point: 4.5237

>NTDB_id=816331 RJD36_RS04545 WP_003065493.1 856382..858373(+) (uvrB) [Streptococcus pasteurianus strain WUSP082]
MIDRVENNQFKLVSKYQPSGDQPEAIEALVDNIEGGEKAQILLGATGTGKTYTMSQVIAKVNKPTLVIAHNKTLAGQLYG
EFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYA
DSVVSLRPGQEISRDQLLNDLVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGKVL
GEVEHLAIFPATHFMTNEEHMEHAIHNILEEMEEQVKQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTNGVENYSRHMDG
RSEGEPPFTLLDFFPEDFLIMVDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYELEQTDTVVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINRRAEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADK
ITESMQKAMDETARRREIQMRYNEEHGIIPQTIKKDIRDLIAISKSSDTDVTEDIPDYNAMTKAERQETIKKLQKQMQEA
AEMLDFELAAQLRDMVLELKALD

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=816331 RJD36_RS04545 WP_003065493.1 856382..858373(+) (uvrB) [Streptococcus pasteurianus strain WUSP082]
ATGATAGATAGAGTAGAGAACAATCAATTTAAATTAGTATCAAAATACCAACCGTCTGGAGACCAACCAGAAGCTATTGA
GGCTTTGGTGGATAATATTGAAGGTGGGGAAAAAGCTCAAATTCTTCTTGGAGCAACAGGAACTGGTAAGACTTATACGA
TGAGTCAAGTTATTGCTAAGGTCAACAAACCAACGTTGGTCATTGCTCATAATAAAACTTTGGCTGGGCAACTTTATGGG
GAATTTAAAGAATTTTTCCCAGACAATGCTGTTGAATATTTTGTGTCTTATTATGATTATTATCAACCAGAAGCTTATGT
GCCTTCTAGCGATACTTATATTGAAAAAGATAGCTCGGTAAATGATGAAATCGATAAATTACGCCATTCAGCAACATCAG
CCCTACTAGAACGTAATGACGTTATCGTAGTAGCGTCGGTATCGTGTATCTATGGTTTGGGGTCACCAAAAGAATATGCT
GATAGTGTGGTTAGTTTGCGACCTGGGCAAGAAATATCACGTGACCAATTGTTAAACGATTTGGTTGACATTCAATTTGA
ACGAAATGACATTGATTTTCAACGTGGCCGTTTTCGTGTGCGTGGCGACGTTGTCGAAATTTTCCCAGCCAGTCGTGATG
AGCATGCTTTTCGTGTGGAATTTTTTGGTGACGAAATTGACCGTATTCGAGAAATCGAAAGTTTGACAGGTAAAGTTCTT
GGTGAGGTGGAACATTTAGCGATTTTCCCTGCTACACACTTCATGACCAATGAGGAACATATGGAGCACGCCATTCACAA
CATTTTGGAAGAAATGGAAGAGCAGGTCAAGCAGTTTGAGGCAGAAGGAAAGTTGATAGAAGCGCAGCGTATTCGCCAAA
GAACAGAATACGATGTTGAAATGCTTCGTGAAATGGGCTATACAAATGGTGTCGAAAATTATTCGCGTCATATGGACGGT
CGTTCAGAAGGGGAGCCACCGTTTACCTTACTTGATTTCTTTCCAGAAGATTTCCTTATTATGGTTGATGAAAGTCACAT
GACCATGGGTCAAATCAAAGGAATGTATAACGGAGACCGTTCGCGTAAGGAAATGCTGGTTAATTATGGTTTTCGTTTAC
CAAGTGCGCTTGATAATCGTCCCTTGCGCCGTGAAGAATTTGAAAGTCATGTTCACCAAATTGTTTACGTGTCAGCCACC
CCAGGGGATTACGAGCTGGAACAAACTGATACTGTTGTTGAACAAATCATTCGTCCAACTGGTTTACTTGACCCTGAAGT
GGAAGTGCGTCCAACCATGGGACAAATGGATGATTTGCTCGGTGAAATCAATAGACGTGCTGAAAAAGGCGAACGCACTT
TCATTACAACATTAACTAAGAAAATGGCAGAAGATTTGACCGATTACCTCAAAGAAATGGGTGTCAAAGTCAAGTATATG
CATTCAGATATTAAAACGTTGGAACGTACGGAGATTATTCGTGATTTGCGTCTAGGTGTTTTTGATGTCTTGATTGGGAT
TAATTTGCTTCGTGAAGGAATTGACGTCCCAGAAGTAAGTTTGGTTGCCATTCTTGATGCGGACAAGGAAGGATTCTTGC
GCAATGAACGTGGTCTTATTCAAACGATTGGGCGTGCAGCGCGAAACAGCGAGGGGCATGTTATCATGTATGCTGATAAG
ATTACAGAATCCATGCAAAAAGCCATGGACGAAACTGCGCGTCGTCGTGAAATTCAAATGCGTTACAATGAAGAACATGG
TATTATTCCGCAAACAATCAAAAAAGATATTCGCGATTTGATTGCCATTTCGAAAAGTTCTGATACAGATGTCACAGAAG
ATATTCCAGACTACAATGCTATGACGAAAGCAGAACGTCAAGAGACCATTAAGAAACTTCAAAAACAAATGCAAGAAGCA
GCAGAAATGCTCGATTTTGAACTTGCTGCCCAATTGCGTGATATGGTATTAGAATTGAAAGCCTTGGATTAG

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(628-661)

Helicase conserved C-terminal domain (Helicase_C)

(443-549)

Type III restriction enzyme, res subunit (ResIII)

(17-143)

UvrB interaction domain (UvrB_inter)

(164-254)

Ultra-violet resistance protein B (UvrB)

(556-598)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0PER4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

87.632

100

0.876
  uvrB Streptococcus pneumoniae D39

87.632

100

0.876
  uvrB Streptococcus pneumoniae TIGR4

87.481

100

0.875