Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   QDY63_RS21660 Genome accession   NZ_CP122540
Coordinates   4711998..4714253 (-) Length   751 a.a.
NCBI ID   WP_223232745.1    Uniprot ID   -
Organism   Pseudomonas brenneri strain K5-sn1400     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4706998..4719253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDY63_RS21625 (QDY63_21625) murB 4707401..4708420 (-) 1020 WP_032861521.1 UDP-N-acetylmuramate dehydrogenase -
  QDY63_RS21630 (QDY63_21630) - 4708417..4708881 (-) 465 WP_032861522.1 low molecular weight protein-tyrosine-phosphatase -
  QDY63_RS21635 (QDY63_21635) kdsB 4708881..4709645 (-) 765 WP_032861524.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QDY63_RS21640 (QDY63_21640) - 4709642..4709827 (-) 186 WP_003174668.1 Trm112 family protein -
  QDY63_RS21645 (QDY63_21645) lpxK 4709852..4710862 (-) 1011 WP_032861526.1 tetraacyldisaccharide 4'-kinase -
  QDY63_RS21650 (QDY63_21650) - 4710862..4711290 (-) 429 WP_032861529.1 biopolymer transporter ExbD -
  QDY63_RS21655 (QDY63_21655) exbB 4711287..4711922 (-) 636 WP_029299724.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QDY63_RS21660 (QDY63_21660) comA 4711998..4714253 (-) 2256 WP_223232745.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QDY63_RS21665 (QDY63_21665) - 4714389..4714904 (+) 516 WP_032861531.1 DUF2062 domain-containing protein -
  QDY63_RS21670 (QDY63_21670) - 4715178..4717931 (+) 2754 WP_289345028.1 response regulator -
  QDY63_RS21675 (QDY63_21675) - 4717968..4718957 (+) 990 WP_032861533.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 81631.06 Da        Isoelectric Point: 11.0327

>NTDB_id=816322 QDY63_RS21660 WP_223232745.1 4711998..4714253(-) (comA) [Pseudomonas brenneri strain K5-sn1400]
MRTGMFALALGLLALRLLPVLPPVGWLLVLPVVALMLLPFRTYPLAFFLLGLAWACFSAQRALDDRLTVALDGQTRWLEG
RVSGLPQQGNGVVRFELSDSRSRQDRLPQRIRVSWQGGPPVHSGERWRLAVTLKRPSGLLNFHGFDQEAWLLAQRVGATG
SVKDGQRLAPARQAWRDGIRQQLLAVDAQGREAGLAALVLGDGSGLAAEDWRILQGTGTVHLLVISGQHIGLLSGLIYAL
VAGLARYGCWPRRLPWLPWACGLAFAAALAYGLLAGFEVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLALNAVLILEPL
ASLQPGFWLSFAAVAVLVLAFSGRLGPWRMWQAWTRAQWLIAIGLFPLLLILGLPISLSAPLANLFAVPWISLLVLPLAL
AGTLLLAVPGLGSGLLWLAGGALDWLFKALALLAGQVPVWMPAEVPVGYWLLSLLGALLLLMPKGIPFRLLGWPLLLLAV
FPPRESIPLGQVAVEQLDVGQGLAVVLRTRHHTLLYDAGPRFGDFDIGARVVLPTLRKLGVTQLDLMLLSHADADHAGGA
AAVARGLPVKRVVGGETQGLPASLGALACVSGERWEWDGVVFQLWQWADARNGNAKSCVLQVQASGERLLLTGDIDREAE
RALLTTPLAVPTDWLQVPHHGSRSSSSWPFVQQLAPKAVLISRGRGNGFGHPHPQVLARYQHFGSAIYDSAEQGAIRLRL
GAFQAPVMARSQRRFWRTPAIDAYQRPVPAT

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=816322 QDY63_RS21660 WP_223232745.1 4711998..4714253(-) (comA) [Pseudomonas brenneri strain K5-sn1400]
ATGCGTACAGGGATGTTTGCGCTGGCGTTGGGGCTGCTGGCGTTGCGCCTGCTGCCCGTCTTGCCGCCGGTCGGTTGGTT
GCTGGTGTTGCCGGTGGTGGCGTTGATGCTGCTGCCGTTTCGTACTTATCCGCTGGCGTTTTTTCTACTGGGCTTGGCGT
GGGCCTGTTTCAGTGCGCAACGGGCACTGGACGACCGGCTAACTGTCGCGCTGGATGGCCAGACCCGTTGGCTGGAAGGG
CGCGTCAGTGGGCTGCCGCAACAGGGCAATGGGGTCGTGCGGTTTGAGCTGAGCGACAGCCGGTCACGCCAGGACCGGCT
ACCTCAACGCATCCGCGTGAGCTGGCAGGGCGGCCCGCCAGTACACAGCGGTGAGCGCTGGCGTTTGGCCGTCACCCTCA
AGCGTCCGTCTGGCCTGCTGAATTTCCATGGATTCGACCAGGAAGCCTGGCTATTGGCCCAGCGTGTGGGCGCGACCGGC
TCGGTCAAGGATGGCCAACGCCTGGCGCCTGCCCGACAGGCCTGGCGCGACGGGATCCGCCAGCAGCTACTGGCGGTCGA
TGCCCAGGGTCGTGAAGCCGGGCTGGCCGCATTGGTACTGGGTGACGGCTCCGGCTTGGCCGCCGAGGACTGGCGCATTT
TGCAGGGCACCGGCACCGTACATTTATTGGTCATCTCTGGCCAACACATCGGCCTGTTGTCGGGGTTGATCTATGCACTG
GTGGCCGGGTTGGCGCGCTATGGCTGCTGGCCCAGACGCTTGCCCTGGCTGCCTTGGGCCTGCGGCCTGGCATTTGCCGC
GGCGCTGGCTTATGGCTTGCTGGCCGGTTTTGAGGTGCCGGTGCAGCGGGCCTGTGTGATGGTCGGGCTGGTGTTGCTGT
GGCGCCTGCGGTTTCGCCATCTGGGGATCTGGTGGCCGCTGCTGCTGGCCCTGAATGCGGTGTTGATCCTTGAACCCTTG
GCCAGTCTGCAACCGGGTTTCTGGCTGTCATTTGCCGCCGTGGCCGTGTTGGTGCTGGCCTTCAGCGGCCGCTTGGGCCC
CTGGCGTATGTGGCAGGCCTGGACCCGCGCCCAATGGCTGATCGCTATTGGGCTGTTTCCGTTACTACTGATCCTCGGTT
TACCGATCAGCTTGAGTGCACCTCTGGCCAATTTGTTTGCGGTGCCGTGGATCAGCCTGCTGGTGCTGCCGCTGGCGTTG
GCGGGCACGTTGTTGCTGGCGGTGCCAGGGCTGGGCAGTGGCTTGCTGTGGCTGGCGGGCGGGGCGCTGGATTGGCTGTT
CAAGGCCCTGGCCTTGCTGGCCGGACAGGTGCCAGTGTGGATGCCTGCCGAGGTGCCCGTCGGTTACTGGCTACTGAGCC
TGCTGGGGGCGCTGCTGTTATTGATGCCCAAGGGCATTCCTTTTCGTCTGCTGGGGTGGCCCCTGTTGCTGCTGGCGGTG
TTCCCGCCCCGTGAATCGATCCCTCTGGGCCAGGTGGCAGTGGAGCAACTGGATGTCGGCCAGGGCCTGGCTGTGGTGTT
ACGTACCCGTCACCACACGCTGTTGTATGACGCCGGGCCGCGCTTCGGGGATTTTGATATCGGCGCGCGCGTGGTACTGC
CGACACTGCGCAAACTGGGAGTTACTCAACTGGACCTGATGCTGCTCAGCCACGCCGACGCGGATCATGCCGGTGGCGCG
GCGGCGGTAGCGCGCGGGTTGCCGGTCAAGCGGGTGGTGGGTGGGGAAACCCAGGGGCTGCCGGCATCCCTCGGCGCCCT
GGCCTGTGTCAGTGGCGAGCGCTGGGAGTGGGATGGCGTGGTGTTTCAGTTATGGCAATGGGCCGATGCCCGCAACGGCA
ATGCGAAGTCGTGCGTGCTACAGGTCCAGGCCAGTGGCGAACGGCTACTGCTGACCGGCGATATTGACCGCGAGGCCGAA
CGGGCCTTGCTCACCACGCCATTGGCGGTGCCCACGGATTGGCTGCAAGTGCCCCATCATGGCAGCCGCAGTTCCTCGTC
ATGGCCGTTTGTCCAGCAGTTGGCGCCCAAGGCCGTGCTGATCTCCCGGGGGCGCGGCAATGGCTTTGGCCATCCGCACC
CGCAAGTGCTGGCGCGTTATCAGCATTTTGGCAGCGCTATTTATGACAGCGCTGAACAGGGCGCCATACGTCTGCGCCTG
GGGGCATTCCAGGCCCCGGTGATGGCGCGCAGCCAGCGCCGTTTCTGGCGCACGCCAGCAATTGACGCTTACCAAAGGCC
GGTACCTGCGACATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-666)

Competence protein (Competence)

(198-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.057

95.739

0.585
  comA Ralstonia pseudosolanacearum GMI1000

35.006

100

0.362