Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QDY63_RS21655 Genome accession   NZ_CP122540
Coordinates   4711287..4711922 (-) Length   211 a.a.
NCBI ID   WP_029299724.1    Uniprot ID   A0AAJ3B5Y0
Organism   Pseudomonas brenneri strain K5-sn1400     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4706287..4716922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDY63_RS21620 (QDY63_21620) - 4706637..4707107 (-) 471 WP_032861520.1 (2Fe-2S)-binding protein -
  QDY63_RS21625 (QDY63_21625) murB 4707401..4708420 (-) 1020 WP_032861521.1 UDP-N-acetylmuramate dehydrogenase -
  QDY63_RS21630 (QDY63_21630) - 4708417..4708881 (-) 465 WP_032861522.1 low molecular weight protein-tyrosine-phosphatase -
  QDY63_RS21635 (QDY63_21635) kdsB 4708881..4709645 (-) 765 WP_032861524.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QDY63_RS21640 (QDY63_21640) - 4709642..4709827 (-) 186 WP_003174668.1 Trm112 family protein -
  QDY63_RS21645 (QDY63_21645) lpxK 4709852..4710862 (-) 1011 WP_032861526.1 tetraacyldisaccharide 4'-kinase -
  QDY63_RS21650 (QDY63_21650) - 4710862..4711290 (-) 429 WP_032861529.1 biopolymer transporter ExbD -
  QDY63_RS21655 (QDY63_21655) exbB 4711287..4711922 (-) 636 WP_029299724.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QDY63_RS21660 (QDY63_21660) comA 4711998..4714253 (-) 2256 WP_223232745.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QDY63_RS21665 (QDY63_21665) - 4714389..4714904 (+) 516 WP_032861531.1 DUF2062 domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22953.06 Da        Isoelectric Point: 6.8772

>NTDB_id=816321 QDY63_RS21655 WP_029299724.1 4711287..4711922(-) (exbB) [Pseudomonas brenneri strain K5-sn1400]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPDHLLGQVWRWIKDKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=816321 QDY63_RS21655 WP_029299724.1 4711287..4711922(-) (exbB) [Pseudomonas brenneri strain K5-sn1400]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGTGTGACCCCTGATCATCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTGGACAAGGAGAAACTCAAGGAGCTGCGGGCCAATTCGCCCCTTGGGGAGATCCTCGCTGCCGGCCTTGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATTGAAGAAGCCGCCGCCCGAGTGATCCACGAGCTGGAGCGCTATAT
CAATGCCCTGGGCACCATCGCGGCAATGGCACCGTTGCTCGGCCTGCTCGGCACCGTGCTGGGCATGATCGATATCTTCA
GCGCCTTCACCGGTTCCGGCATGACCACTAACGCCTCGGTGTTGGCCGGAGGGATTTCCAAGGCCCTGATCACCACGGCG
GCGGGCCTGATGGTGGGGATCCCGGCGGTATTCTTCCACCGTTTCCTGCAGCGCCGTATCGATGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTCCAGGGCGACCGTGATGTCGATCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867