Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QCM40_RS03785 Genome accession   NZ_CP122516
Coordinates   760791..761591 (+) Length   266 a.a.
NCBI ID   WP_121097345.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP34     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 755791..766591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCM40_RS03750 (QCM40_03750) pseH 756291..756833 (+) 543 WP_279956526.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  QCM40_RS03755 (QCM40_03755) - 756766..757704 (-) 939 WP_279956527.1 tetraacyldisaccharide 4'-kinase -
  QCM40_RS03760 (QCM40_03760) - 757701..758483 (-) 783 WP_121097354.1 NAD+ synthase -
  QCM40_RS03770 (QCM40_03770) ilvC 758732..759724 (+) 993 WP_121097351.1 ketol-acid reductoisomerase -
  QCM40_RS03775 (QCM40_03775) minD 759748..760554 (+) 807 WP_121097348.1 septum site-determining protein MinD -
  QCM40_RS03780 (QCM40_03780) minE 760551..760784 (+) 234 WP_001008714.1 cell division topological specificity factor MinE -
  QCM40_RS03785 (QCM40_03785) dprA 760791..761591 (+) 801 WP_121097345.1 DNA-processing protein DprA Machinery gene
  QCM40_RS03790 (QCM40_03790) dprB 761588..761992 (+) 405 WP_121097342.1 Holliday junction resolvase RuvX Machinery gene
  QCM40_RS03795 (QCM40_03795) - 762203..763075 (+) 873 WP_279956529.1 tetratricopeptide repeat protein -
  QCM40_RS03800 (QCM40_03800) - 763264..763602 (+) 339 WP_000699911.1 hypothetical protein -
  QCM40_RS03805 (QCM40_03805) - 763586..764146 (+) 561 WP_279956530.1 hypothetical protein -
  QCM40_RS03810 (QCM40_03810) - 764250..765131 (-) 882 WP_279956531.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29922.90 Da        Isoelectric Point: 9.1327

>NTDB_id=816265 QCM40_RS03785 WP_121097345.1 760791..761591(+) (dprA) [Helicobacter pylori strain HP34]
MKSHFQYSTLENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQKIAQNGLILSEYEKDFMPIKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIRRINHLVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=816265 QCM40_RS03785 WP_121097345.1 760791..761591(+) (dprA) [Helicobacter pylori strain HP34]
ATGAAAAGCCATTTCCAATACAGCACGCTAGAGAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAACT
CTATTGTGTGGGCGACACCAAGCTTTTAGAAGCGCCTTTAAAAGTGGCTATCATCGGCACAAGAAGACCCACCCCTTACA
GCAAGCAACACACGATCACTCTAGCCAGAGAGCTTGCTAAAAATGGTGCGGTTATTGTGAGCGGGGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTGCCAAAAACGATCATGCTTTCGCCTTGCAGTTTGGATTTCATCTATCCTACGAA
CAACCATAAAGTGATCCAAAAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTCATGCCTATTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTCATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCCCAAAAATACCAAAAACCCTTGTTTGTTTTGCCTCAGCGCTTAAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAATACCCTTTTAAAAGATT
ATCATTTAAAAGAAATGCCTGAAATGAAAGATGAATTTTTAGAATATTGCGCGAAAAACCCGAGCTATGAAGAAGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATTAGGCGCATCAATCATCTCGTGGTGTTAGCGTG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

97.368

100

0.974
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.673

84.962

0.414