Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   QCM40_RS03790 Genome accession   NZ_CP122516
Coordinates   761588..761992 (+) Length   134 a.a.
NCBI ID   WP_121097342.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 756588..766992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCM40_RS03755 (QCM40_03755) - 756766..757704 (-) 939 WP_279956527.1 tetraacyldisaccharide 4'-kinase -
  QCM40_RS03760 (QCM40_03760) - 757701..758483 (-) 783 WP_121097354.1 NAD+ synthase -
  QCM40_RS03770 (QCM40_03770) ilvC 758732..759724 (+) 993 WP_121097351.1 ketol-acid reductoisomerase -
  QCM40_RS03775 (QCM40_03775) minD 759748..760554 (+) 807 WP_121097348.1 septum site-determining protein MinD -
  QCM40_RS03780 (QCM40_03780) minE 760551..760784 (+) 234 WP_001008714.1 cell division topological specificity factor MinE -
  QCM40_RS03785 (QCM40_03785) dprA 760791..761591 (+) 801 WP_121097345.1 DNA-processing protein DprA Machinery gene
  QCM40_RS03790 (QCM40_03790) dprB 761588..761992 (+) 405 WP_121097342.1 Holliday junction resolvase RuvX Machinery gene
  QCM40_RS03795 (QCM40_03795) - 762203..763075 (+) 873 WP_279956529.1 tetratricopeptide repeat protein -
  QCM40_RS03800 (QCM40_03800) - 763264..763602 (+) 339 WP_000699911.1 hypothetical protein -
  QCM40_RS03805 (QCM40_03805) - 763586..764146 (+) 561 WP_279956530.1 hypothetical protein -
  QCM40_RS03810 (QCM40_03810) - 764250..765131 (-) 882 WP_279956531.1 RluA family pseudouridine synthase -
  QCM40_RS03815 (QCM40_03815) recJ 765131..766681 (-) 1551 WP_120927095.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15084.50 Da        Isoelectric Point: 8.7123

>NTDB_id=816266 QCM40_RS03790 WP_121097342.1 761588..761992(+) (dprB) [Helicobacter pylori strain HP34]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSVEAYDNLEHLGKKNKRLATKDGRLDSLSACKILERYCQQVLKKG

Nucleotide


Download         Length: 405 bp        

>NTDB_id=816266 QCM40_RS03790 WP_121097342.1 761588..761992(+) (dprB) [Helicobacter pylori strain HP34]
GTGATTTTAGCGTGTGATGTGGGGCTAAAACGCATTGGAATCGCTGTGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAATAGGAATCAAGCTTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCTAATGAAAGCTATGCGGATACGAATGCACGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATTGTTTTTATCAATGAAGATAATTCTAGCGTAGAAGCTTATGATAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTACCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAAGATTTTAGAGCGCTATTGCCAACAGGTTTTAAAAAAGG
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.939

98.507

0.925