Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   R1T29_RS15135 Genome accession   NZ_CP136903
Coordinates   3258506..3260587 (+) Length   693 a.a.
NCBI ID   WP_203504518.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain X1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3253506..3265587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T29_RS15115 (R1T29_15115) gmk 3254409..3255032 (+) 624 WP_005496750.1 guanylate kinase -
  R1T29_RS15120 (R1T29_15120) rpoZ 3255214..3255486 (+) 273 WP_005379346.1 DNA-directed RNA polymerase subunit omega -
  R1T29_RS15125 (R1T29_15125) spoT 3255526..3257646 (+) 2121 WP_005459012.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  R1T29_RS15130 (R1T29_15130) trmH 3257704..3258387 (+) 684 WP_005478720.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  R1T29_RS15135 (R1T29_15135) recG 3258506..3260587 (+) 2082 WP_203504518.1 ATP-dependent DNA helicase RecG Machinery gene
  R1T29_RS15140 (R1T29_15140) - 3260820..3262211 (+) 1392 WP_005459007.1 uracil-xanthine permease family protein -
  R1T29_RS15145 (R1T29_15145) envZ 3262276..3263568 (-) 1293 WP_005459014.1 two-component system sensor histidine kinase EnvZ -
  R1T29_RS15150 (R1T29_15150) ompR 3263674..3264393 (-) 720 WP_005459027.1 two-component system response regulator OmpR -
  R1T29_RS15155 (R1T29_15155) - 3264612..3265004 (-) 393 WP_021449007.1 DUF1090 domain-containing protein -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76760.84 Da        Isoelectric Point: 7.9691

>NTDB_id=816174 R1T29_RS15135 WP_203504518.1 3258506..3260587(+) (recG) [Vibrio parahaemolyticus strain X1]
MSAQMLSAVPLTSLSGVGAKVAEKLAKVGLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGKVMTVDTIFGKRKM
LTVKISDGNGTITLRFFNFTAAMKNNFSQGKLVHAYGEIKRGGMGLEIVHPDYKFYASEQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTEQALVLLDKAAVQELLPSGLYNHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLAVR
SKGQQDIALPLAPCDKLKKQLLAQLPFSPTNAQARVVKEIESDLEKPYPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFEAMGIQVGWLAGKLKGKAKETELARIASGEAQMIVGTHALFQEHVEFHHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNACL
NEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQEFKDNKLHLLVATTVIEVGVDVP
NSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHAPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRIARHIHDNYPTNAAAIIDRWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=816174 R1T29_RS15135 WP_203504518.1 3258506..3260587(+) (recG) [Vibrio parahaemolyticus strain X1]
ATGTCTGCCCAAATGCTATCTGCTGTTCCTTTAACTTCTCTATCAGGAGTTGGCGCCAAAGTCGCAGAAAAACTCGCTAA
AGTCGGCTTGCATAGCGTTCAAGATTTGTTGTTCCACCTGCCTCTACGCTACGAAGATCGCACCCGCATTTATCCTATTG
CCAAACTGCACGCAGGCCTTTGGGCTGCGGTACAAGGTAAAGTCATGACCGTCGATACCATTTTTGGTAAACGCAAAATG
CTGACAGTCAAAATCAGTGACGGCAATGGCACTATCACGCTGCGTTTTTTCAACTTTACTGCAGCGATGAAGAACAATTT
TTCACAGGGTAAGTTAGTACACGCTTACGGAGAAATTAAGCGTGGTGGTATGGGGCTGGAAATTGTGCACCCTGACTACA
AATTTTACGCCAGTGAACAAAAGCCAGATGTGGAACAAAGCTTAACCCCGGTTTATCCAACCACAGATGGCCTGCGTCAA
ATCACTTTACGTAACCTTACTGAGCAAGCATTGGTGCTACTCGATAAAGCAGCAGTGCAAGAATTGCTACCTTCTGGCTT
GTATAACCATCAGATTACTATGTCGCAGGCGTTGCACACCATTCATCGCCCGCCGCCAACCATTAATTTAGATGAATTTG
ATGAAGGTAAGCACCCCGCTCAAATCCGTTTGATCATGGAAGAATTGCTCGCTCAGAACTTGTCGATGTTGGCGGTTCGC
AGCAAAGGCCAGCAAGATATCGCCTTACCGCTCGCACCATGTGACAAACTGAAAAAACAGCTGTTGGCGCAACTGCCGTT
TTCTCCGACCAATGCTCAAGCACGCGTGGTGAAAGAGATTGAATCCGACCTCGAAAAGCCGTATCCAATGATGCGTCTTG
TCCAAGGTGACGTAGGCTCAGGGAAAACCCTCGTCGCGGCACTGGCTGCGGTTCGAGCTATCGAGCACGGTTATCAGGTC
GCACTAATGGCACCAACTGAGCTGCTCGCCGAACAACACGCCATCAATTTCGCCAACTGGTTTGAAGCCATGGGCATTCA
AGTAGGCTGGCTTGCTGGTAAGCTCAAGGGCAAAGCCAAAGAGACGGAACTGGCTCGCATTGCCAGCGGTGAAGCGCAAA
TGATAGTGGGTACTCACGCCCTCTTCCAAGAACATGTGGAATTTCATCACCTAGCTTTAGTCATCATTGATGAGCAGCAC
CGCTTTGGCGTCCATCAGCGATTAGAGTTACGTGAGAAAGGGGCAAAACAAGGCGCGTATCCGCATCAGCTCATCATGAC
GGCGACTCCGATTCCTCGCACGCTAGCAATGACAGCGTATGCTGATTTGGAAACGTCGGTGATAGACGAATTACCACCAG
GCCGAACGCCGATTCAAACCGTCGCCATTCCAGATACCAAACGTGACGACATTGTCGAGCGGGTACGAAACGCTTGTCTT
AACGAAGGCAAGCAAGCGTATTGGGTGTGTACGCTGATCGATGAATCGGAAGTGTTGGAAGCTCAAGCCGCAGCAGACAC
CGCCGAAGAGTTGCAGCGCAAACTGCCAGATGTAAAAATTGGCCTAGTTCATGGCCGTATGAAGCCCGCCGAAAAGCAAG
CTGTCATGCAAGAGTTTAAAGACAACAAGCTCCACCTGCTCGTAGCCACGACGGTGATAGAAGTTGGCGTAGACGTGCCA
AACTCTAGCTTGATGATCATCGAAAACCCTGAACGCCTTGGTTTGGCTCAATTACACCAGTTAAGAGGCCGCGTCGGTCG
AGGCTCGGTTGCCAGTCACTGTGTCCTGCTGTACCACGCCCCCCTGTCGAAAACCGCACAAAAACGACTCGGTGTGCTGC
GTGAAAGTAACGATGGCTTTGTTATTGCGCAGAAAGACCTCGAGATCCGCGGGCCCGGCGAATTGTTGGGCACCAAACAA
ACAGGCTTGGCTGATTTCAAAATTGCCGATTTAGTTCGAGATCAACGCTTAATTCCCGAAGTTCAACGTATTGCACGTCA
TATTCACGACAATTACCCAACCAATGCAGCCGCCATTATCGATCGCTGGCTAGGCGAGCGTGATATCTACTCCAAAGCGT
AA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(271-433)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

RecG wedge domain (RecG_wedge)

(15-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.405

96.97

0.479
  recG/mmsA Streptococcus pneumoniae R6

40.149

96.681

0.388
  recG/mmsA Streptococcus pneumoniae R36A

40.149

96.681

0.388
  recG Bacillus subtilis subsp. subtilis str. 168

39.818

94.949

0.378