Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   R0792_RS18465 Genome accession   NZ_CP136842
Coordinates   3992810..3993454 (+) Length   214 a.a.
NCBI ID   WP_003085214.1    Uniprot ID   A0A0H2ZLY6
Organism   Pseudomonas aeruginosa PA14     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3987810..3998454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0792_RS18440 - 3988302..3989783 (-) 1482 WP_003121853.1 AAA family ATPase -
  R0792_RS18445 - 3989862..3990200 (+) 339 WP_003085225.1 histidine triad nucleotide-binding protein -
  R0792_RS18450 coq7 3990300..3990947 (+) 648 WP_003085224.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  R0792_RS18455 speD 3991002..3991796 (-) 795 WP_003085223.1 adenosylmethionine decarboxylase -
  R0792_RS18460 - 3992116..3992538 (-) 423 WP_003085219.1 OsmC family protein -
  R0792_RS18465 crp 3992810..3993454 (+) 645 WP_003085214.1 cAMP-activated global transcriptional regulator CRP Regulator
  R0792_RS18470 trpC 3993516..3994352 (-) 837 WP_003137410.1 indole-3-glycerol phosphate synthase TrpC -
  R0792_RS18475 trpD 3994349..3995398 (-) 1050 WP_003085203.1 anthranilate phosphoribosyltransferase -
  R0792_RS18480 - 3995400..3996005 (-) 606 WP_003117978.1 aminodeoxychorismate/anthranilate synthase component II -
  R0792_RS18485 - 3996424..3996654 (-) 231 WP_003118930.1 hypothetical protein -
  R0792_RS18490 - 3996651..3996953 (-) 303 WP_003113177.1 hypothetical protein -
  R0792_RS18495 - 3996953..3998005 (-) 1053 WP_003137407.1 pyocin knob domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24225.01 Da        Isoelectric Point: 8.0525

>NTDB_id=815920 R0792_RS18465 WP_003085214.1 3992810..3993454(+) (crp) [Pseudomonas aeruginosa PA14]
MVAITHTPKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEK
EGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLCQQPD
AMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=815920 R0792_RS18465 WP_003085214.1 3992810..3993454(+) (crp) [Pseudomonas aeruginosa PA14]
ATGGTAGCTATTACCCACACACCCAAACTCAAACACCTAGACAAGCTGCTCGCACACTGTCACCGCCGCCGCTACACCGC
AAAGAGCACCATCATCTATGCCGGCGATCGCTGCGAAACGCTGTTCTTCATCATCAAGGGTTCGGTCACCATCCTCATCG
AGGACGACGACGGCCGCGAAATGATCATCGGCTACCTCAACAGCGGTGATTTCTTCGGCGAGCTGGGATTGTTCGAAAAG
GAAGGCAGCGAACAGGAACGCAGCGCCTGGGTTCGTGCCAAGGTGGAATGCGAAGTCGCCGAGATCAGCTATGCGAAGTT
CCGCGAACTGTCGCAGCAGGACTCGGAGATCCTCTACACCCTCGGCAGCCAGATGGCCGACCGCCTGCGCAAGACCACCC
GCAAGGTGGGCGACCTGGCCTTCCTCGACGTCACCGGACGCGTCGCCCGCACCTTGCTGGACCTGTGCCAGCAACCGGAC
GCCATGACCCACCCGGACGGCATGCAGATCAAGATCACCCGCCAGGAGATCGGCCGGATCGTCGGCTGCTCGCGGGAAAT
GGTCGGACGCGTGCTGAAGAGCCTGGAGGAGCAGGGCCTGGTGCATGTGAAAGGAAAGACCATGGTGGTCTTCGGCACCC
GCTGA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(22-114)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(146-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZLY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

67.327

94.393

0.636
  crp Haemophilus influenzae Rd KW20

60.396

94.393

0.57
  crp Acinetobacter baumannii D1279779

54.545

92.523

0.505