Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   R1T10_RS10790 Genome accession   NZ_CP136807
Coordinates   2162039..2162623 (+) Length   194 a.a.
NCBI ID   WP_002218660.1    Uniprot ID   A9M3B7
Organism   Neisseria meningitidis NMB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2157039..2167623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T10_RS10750 - 2157485..2157754 (-) 270 WP_002218669.1 hypothetical protein -
  R1T10_RS10755 - 2157942..2158730 (-) 789 WP_002226007.1 hypothetical protein -
  R1T10_RS10760 bioH 2158732..2159475 (-) 744 WP_002226006.1 pimeloyl-ACP methyl ester esterase BioH -
  R1T10_RS10765 - 2159474..2160199 (+) 726 WP_002226004.1 ComF family protein -
  R1T10_RS10770 trmL 2160264..2160728 (+) 465 WP_002215661.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  R1T10_RS10775 - 2160739..2160861 (+) 123 WP_009346050.1 hypothetical protein -
  R1T10_RS10780 - 2160858..2161577 (+) 720 WP_002226003.1 septal ring lytic transglycosylase RlpA family protein -
  R1T10_RS10785 - 2161631..2161957 (+) 327 WP_002218661.1 PepSY domain-containing protein -
  R1T10_RS10790 ruvA 2162039..2162623 (+) 585 WP_002218660.1 Holliday junction branch migration protein RuvA Machinery gene
  R1T10_RS10795 - 2162623..2162760 (+) 138 WP_002231623.1 hypothetical protein -
  R1T10_RS10800 - 2162786..2164642 (+) 1857 WP_002221597.1 ABC transporter ATP-binding protein -
  R1T10_RS10805 rsgA 2164647..2165570 (+) 924 WP_002221598.1 ribosome small subunit-dependent GTPase A -
  R1T10_RS10810 - 2165598..2165906 (+) 309 WP_002221599.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 20659.85 Da        Isoelectric Point: 5.1063

>NTDB_id=815879 R1T10_RS10790 WP_002218660.1 2162039..2162623(+) (ruvA) [Neisseria meningitidis NMB]
MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLLFGFATAEERKTFRQLIKVGG
IGAKTALGILSAMTADELAQAVAEEDVKRLSSAPGIGKKTAERMVLELRGKLVAHTVTDGLFAAAPAADETEDIVSTLLA
LGYSEREAKAAVKGVPEGTDVGEGVRLALKNLLK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=815879 R1T10_RS10790 WP_002218660.1 2162039..2162623(+) (ruvA) [Neisseria meningitidis NMB]
ATGATCAGCAGACTGACCGGCAAACTGGTTGAAAAAAACCCTCCGCAAATCGTCATCGATGTCAACGGTGTCGGCTATGA
GGCCGACGTATCGATGCAGACCTTCTACAACCTGCCGCCCGTGGGTGAAAGCGTACAACTGTTTACCCAGCTTATCATTC
GGGAAGACGCACATCTTTTATTTGGTTTTGCCACTGCGGAAGAACGCAAAACATTCCGCCAACTGATTAAGGTCGGCGGC
ATCGGCGCGAAAACGGCTTTGGGCATTTTGTCGGCGATGACGGCAGACGAACTGGCGCAGGCGGTTGCAGAAGAAGATGT
CAAACGCCTGTCTTCCGCGCCGGGAATCGGCAAAAAAACCGCCGAACGTATGGTCTTGGAACTGCGCGGCAAGCTGGTCG
CGCATACGGTAACGGACGGGCTGTTTGCCGCCGCACCCGCCGCCGACGAAACGGAAGACATCGTCAGCACGCTGCTTGCG
CTGGGTTACAGCGAACGCGAAGCAAAAGCGGCGGTCAAAGGCGTTCCGGAGGGGACGGACGTGGGCGAAGGCGTGCGCCT
TGCTTTGAAAAACCTGCTGAAATAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(150-192)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A9M3B7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

38

100

0.392
  ruvA Streptococcus pneumoniae D39

38

100

0.392
  ruvA Streptococcus pneumoniae TIGR4

37.5

100

0.387
  ruvA Bacillus subtilis subsp. subtilis str. 168

35.922

100

0.381