Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Regulator
Locus tag   R1T10_RS07925 Genome accession   NZ_CP136807
Coordinates   1585927..1586538 (-) Length   203 a.a.
NCBI ID   WP_002226442.1    Uniprot ID   -
Organism   Neisseria meningitidis NMB     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1580927..1591538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T10_RS07910 pilX 1583900..1584373 (-) 474 WP_002244519.1 PilX family type IV pilin Machinery gene
  R1T10_RS07915 pilK 1584378..1584977 (-) 600 WP_002244518.1 pilus assembly protein Machinery gene
  R1T10_RS07920 pilJ 1584956..1585930 (-) 975 WP_017201059.1 PilW family protein Machinery gene
  R1T10_RS07925 pilV 1585927..1586538 (-) 612 WP_002226442.1 type IV pilus modification protein PilV Regulator
  R1T10_RS07930 pilH 1586568..1587236 (-) 669 WP_017201061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  R1T10_RS07935 dnaB 1587538..1588944 (-) 1407 WP_002220671.1 replicative DNA helicase -
  R1T10_RS07940 - 1589107..1589694 (+) 588 WP_002220670.1 superoxide dismutase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22074.06 Da        Isoelectric Point: 5.6863

>NTDB_id=815859 R1T10_RS07925 WP_002226442.1 1585927..1586538(-) (pilV) [Neisseria meningitidis NMB]
MKNNDCFRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYMGNHHTLSVVDGDFQVGVIKTKTQLAEAQLKRFSYELKNALPDAAAIHYAVCKDSSGNAPTLSGNAFSSNCDNKAN
GDTLIKVLWVNDSAGDSDIARTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=815859 R1T10_RS07925 WP_002226442.1 1585927..1586538(-) (pilV) [Neisseria meningitidis NMB]
ATGAAGAATAATGATTGCTTCCGCCTGAAAAACCCCCAGTCCGGTATGGCGCTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCACTATTGTCTGTTCAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCAGAGACGCAAACCA
TCGTCAGTCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACATGGGAAACCATCATACACTATCAGTTGTGGATGGCGATTTTCAGGTTGGTGTCATAAAAACTAAGAC
GCAGTTGGCAGAGGCACAATTGAAGAGATTTAGTTATGAGCTGAAAAATGCCTTGCCGGATGCGGCAGCCATCCATTACG
CCGTCTGCAAGGATTCGTCGGGTAACGCGCCGACATTGTCCGGCAATGCTTTTTCTTCAAATTGCGACAATAAGGCAAAC
GGGGATACTTTAATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTGCCCGTACGAATCTTGAGGTGAG
CGGCGACAATATCGTATATACTTATCAGGCAAGGGTCGGAGGTCGGGAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

94.175

100

0.956
  pilV/pilI Neisseria gonorrhoeae MS11

85.714

100

0.857