Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   R1T10_RS07930 Genome accession   NZ_CP136807
Coordinates   1586568..1587236 (-) Length   222 a.a.
NCBI ID   WP_017201061.1    Uniprot ID   -
Organism   Neisseria meningitidis NMB     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1581568..1592236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T10_RS07910 pilX 1583900..1584373 (-) 474 WP_002244519.1 PilX family type IV pilin Machinery gene
  R1T10_RS07915 pilK 1584378..1584977 (-) 600 WP_002244518.1 pilus assembly protein Machinery gene
  R1T10_RS07920 pilJ 1584956..1585930 (-) 975 WP_017201059.1 PilW family protein Machinery gene
  R1T10_RS07925 pilV 1585927..1586538 (-) 612 WP_002226442.1 type IV pilus modification protein PilV Regulator
  R1T10_RS07930 pilH 1586568..1587236 (-) 669 WP_017201061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  R1T10_RS07935 dnaB 1587538..1588944 (-) 1407 WP_002220671.1 replicative DNA helicase -
  R1T10_RS07940 - 1589107..1589694 (+) 588 WP_002220670.1 superoxide dismutase -
  R1T10_RS07945 - 1591032..1591541 (-) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  R1T10_RS07950 - 1591873..1592205 (-) 333 WP_002226445.1 hypothetical protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24702.22 Da        Isoelectric Point: 9.7407

>NTDB_id=815860 R1T10_RS07930 WP_017201061.1 1586568..1587236(-) (pilH) [Neisseria meningitidis NMB]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKGGAPN
NKCDSGKKGQGMLAFGDKNGNKTYDGDTADVLLRSVVLNDDINDKRINYAFNHIAFGSSQPTADRVVWTFNQNGTFGYTK
DQHFTSKSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRNDRRTVCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=815860 R1T10_RS07930 WP_017201061.1 1586568..1587236(-) (pilH) [Neisseria meningitidis NMB]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGAGAAGCCGTCCGGCTCAATCTTCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGGCGGTGCGCCCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTTGGCGATAAGAATGGCAATAAGACATATGACGGCGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATTTTACAAGCAAATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACG
ATAGGCGTACCGTATGCCAATATAAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

85.52

99.55

0.851