Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | HSX14_RS06165 | Genome accession | NZ_AP023189 |
| Coordinates | 1322152..1323021 (-) | Length | 289 a.a. |
| NCBI ID | WP_173173305.1 | Uniprot ID | A0A6J4DZF5 |
| Organism | Pseudomonas tohonis strain TUM18999 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1317152..1328021
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HSX14_RS06125 (TUM18999_12160) | - | 1318446..1318619 (-) | 174 | WP_173173318.1 | DUF3094 domain-containing protein | - |
| HSX14_RS06130 (TUM18999_12170) | - | 1318706..1319332 (-) | 627 | WP_173173316.1 | DUF1780 domain-containing protein | - |
| HSX14_RS06135 (TUM18999_12180) | - | 1319445..1319870 (+) | 426 | WP_173173313.1 | GNAT family N-acetyltransferase | - |
| HSX14_RS06140 (TUM18999_12190) | - | 1319867..1320334 (+) | 468 | WP_111263619.1 | FAD/FMN-containing dehydrogenase | - |
| HSX14_RS06145 (TUM18999_12200) | - | 1320331..1321017 (+) | 687 | WP_173173311.1 | energy-coupling factor ABC transporter permease | - |
| HSX14_RS06150 (TUM18999_12210) | - | 1321125..1321340 (+) | 216 | WP_173173309.1 | hypothetical protein | - |
| HSX14_RS06155 (TUM18999_12220) | yacG | 1321344..1321544 (-) | 201 | WP_111263622.1 | DNA gyrase inhibitor YacG | - |
| HSX14_RS06160 (TUM18999_12230) | coaE | 1321541..1322152 (-) | 612 | WP_173173307.1 | dephospho-CoA kinase | - |
| HSX14_RS06165 (TUM18999_12240) | pilD | 1322152..1323021 (-) | 870 | WP_173173305.1 | prepilin peptidase | Machinery gene |
| HSX14_RS06170 (TUM18999_12250) | pilC | 1323022..1324242 (-) | 1221 | WP_173173303.1 | type II secretion system F family protein | Machinery gene |
| HSX14_RS06175 (TUM18999_12260) | pilB | 1324246..1325949 (-) | 1704 | WP_173173301.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| HSX14_RS06180 (TUM18999_12270) | pilA | 1326045..1326458 (-) | 414 | WP_173173299.1 | pilin | Machinery gene |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 31817.72 Da Isoelectric Point: 6.3185
>NTDB_id=81576 HSX14_RS06165 WP_173173305.1 1322152..1323021(-) (pilD) [Pseudomonas tohonis strain TUM18999]
MTVIDFLAGNLPAFVFCIFLLGLLVGSFLNVVIYRLPVMMFRDWKAQAREALELPAEPQGETFNLILPNSRCPHCQHEIQ
AWENIPVVSWLALGGKCSSCKAPIKKRYPLVELACGLLSAYVAWHFGFTWQAGAFLVLTWGLLAMSMIDVDHQLLPDSLV
LPLLWLGLILNNQGMFATPSDALWGAVGGYLSLWSVYWVFKLVTGKEGMGYGDFKLLAMIGAWGGWQVLPLTILLSSLVG
AILGIIILKLRDADSSTPIPFGPYLAIAGWIALLWGDQITGTYLHFAGF
MTVIDFLAGNLPAFVFCIFLLGLLVGSFLNVVIYRLPVMMFRDWKAQAREALELPAEPQGETFNLILPNSRCPHCQHEIQ
AWENIPVVSWLALGGKCSSCKAPIKKRYPLVELACGLLSAYVAWHFGFTWQAGAFLVLTWGLLAMSMIDVDHQLLPDSLV
LPLLWLGLILNNQGMFATPSDALWGAVGGYLSLWSVYWVFKLVTGKEGMGYGDFKLLAMIGAWGGWQVLPLTILLSSLVG
AILGIIILKLRDADSSTPIPFGPYLAIAGWIALLWGDQITGTYLHFAGF
Nucleotide
Download Length: 870 bp
>NTDB_id=81576 HSX14_RS06165 WP_173173305.1 1322152..1323021(-) (pilD) [Pseudomonas tohonis strain TUM18999]
GTGACAGTCATCGACTTCCTGGCCGGCAACTTGCCGGCCTTTGTTTTCTGCATATTCCTCCTCGGCCTTCTCGTCGGCAG
TTTCCTCAACGTCGTCATCTACCGCCTGCCGGTGATGATGTTCCGCGACTGGAAGGCGCAGGCGCGGGAGGCGTTGGAGT
TGCCGGCGGAGCCCCAGGGCGAGACCTTCAACCTGATCCTGCCGAACTCGCGCTGCCCGCATTGCCAGCATGAGATCCAG
GCCTGGGAGAACATCCCGGTGGTCAGCTGGCTGGCCTTGGGTGGCAAGTGCTCGTCGTGCAAGGCGCCAATCAAGAAGCG
CTACCCGCTGGTAGAGCTGGCGTGCGGCCTGTTGTCGGCCTATGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCCGGGG
CGTTCCTGGTGCTGACCTGGGGCCTGCTGGCGATGAGCATGATCGACGTCGACCACCAGCTGCTGCCGGACTCCCTGGTG
CTGCCGCTGCTATGGCTCGGGCTGATCCTCAACAACCAGGGCATGTTCGCCACGCCTAGCGATGCGCTCTGGGGCGCGGT
GGGCGGCTATCTCAGCCTGTGGTCGGTGTACTGGGTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCGATGATCGGCGCCTGGGGTGGCTGGCAGGTGCTGCCGCTGACCATCCTGCTGTCGTCCCTGGTGGGC
GCCATATTGGGGATCATCATCCTCAAGCTGCGCGACGCGGACAGCAGCACGCCCATCCCCTTCGGCCCCTACCTGGCCAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGATCAAATAACCGGGACCTATCTCCACTTCGCCGGTTTCTGA
GTGACAGTCATCGACTTCCTGGCCGGCAACTTGCCGGCCTTTGTTTTCTGCATATTCCTCCTCGGCCTTCTCGTCGGCAG
TTTCCTCAACGTCGTCATCTACCGCCTGCCGGTGATGATGTTCCGCGACTGGAAGGCGCAGGCGCGGGAGGCGTTGGAGT
TGCCGGCGGAGCCCCAGGGCGAGACCTTCAACCTGATCCTGCCGAACTCGCGCTGCCCGCATTGCCAGCATGAGATCCAG
GCCTGGGAGAACATCCCGGTGGTCAGCTGGCTGGCCTTGGGTGGCAAGTGCTCGTCGTGCAAGGCGCCAATCAAGAAGCG
CTACCCGCTGGTAGAGCTGGCGTGCGGCCTGTTGTCGGCCTATGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCCGGGG
CGTTCCTGGTGCTGACCTGGGGCCTGCTGGCGATGAGCATGATCGACGTCGACCACCAGCTGCTGCCGGACTCCCTGGTG
CTGCCGCTGCTATGGCTCGGGCTGATCCTCAACAACCAGGGCATGTTCGCCACGCCTAGCGATGCGCTCTGGGGCGCGGT
GGGCGGCTATCTCAGCCTGTGGTCGGTGTACTGGGTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCGATGATCGGCGCCTGGGGTGGCTGGCAGGTGCTGCCGCTGACCATCCTGCTGTCGTCCCTGGTGGGC
GCCATATTGGGGATCATCATCCTCAAGCTGCGCGACGCGGACAGCAGCACGCCCATCCCCTTCGGCCCCTACCTGGCCAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGATCAAATAACCGGGACCTATCTCCACTTCGCCGGTTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Acinetobacter baumannii D1279779 |
52.465 |
98.27 |
0.516 |
| pilD | Vibrio cholerae strain A1552 |
56.015 |
92.042 |
0.516 |
| pilD | Acinetobacter nosocomialis M2 |
51.761 |
98.27 |
0.509 |
| pilD | Vibrio campbellii strain DS40M4 |
52.747 |
94.464 |
0.498 |
| pilD | Neisseria gonorrhoeae MS11 |
50.958 |
90.311 |
0.46 |