Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RYQ61_RS08130 Genome accession   NZ_CP136799
Coordinates   1609551..1611539 (+) Length   662 a.a.
NCBI ID   WP_102568053.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1604551..1616539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS08120 (RYQ61_08120) - 1606018..1606758 (-) 741 WP_102568055.1 amino acid ABC transporter ATP-binding protein -
  RYQ61_RS08125 (RYQ61_08125) - 1606758..1608935 (-) 2178 WP_102568054.1 ABC transporter substrate-binding protein/permease -
  RYQ61_RS08130 (RYQ61_08130) uvrB 1609551..1611539 (+) 1989 WP_102568053.1 excinuclease ABC subunit UvrB Machinery gene
  RYQ61_RS08135 (RYQ61_08135) - 1611648..1612379 (+) 732 Protein_1559 hypothetical protein -
  RYQ61_RS08140 (RYQ61_08140) - 1612456..1612953 (+) 498 WP_048786698.1 GNAT family N-acetyltransferase -
  RYQ61_RS08145 (RYQ61_08145) - 1612988..1613539 (+) 552 WP_102568052.1 DUF1697 domain-containing protein -
  RYQ61_RS08150 (RYQ61_08150) hemW 1613642..1614772 (+) 1131 WP_048786695.1 radical SAM family heme chaperone HemW -
  RYQ61_RS08155 (RYQ61_08155) - 1614776..1615516 (+) 741 WP_102568051.1 acyl-[acyl-carrier-protein] thioesterase -
  RYQ61_RS08160 (RYQ61_08160) - 1615503..1616129 (+) 627 WP_102568050.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 75617.62 Da        Isoelectric Point: 4.5047

>NTDB_id=815700 RYQ61_RS08130 WP_102568053.1 1609551..1611539(+) (uvrB) [Streptococcus intermedius strain XH2169]
MINRITDNEFKLVSKYEPSGDQPQAIEELVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIAHNKTLAGQLYG
EFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYS
DSVVSLRPGLEISRDKLLNDLVDIQFERNDIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVL
GEVDHLAIFPATHFMTNDENMEIAIAKIQAELEQQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTNGVENYSRHMDG
RSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYENEQTDTVIEQIIRPTGLLDPEVEVRPTMGQIDDLLGEITARAEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADT
MTQSMQRAIDETARRRAIQMAYNEEHGIVPQTIKKEIRDLISVTKAALPDKEETVEIESLNKQERKDMIKKLEGQMQEAA
GLLDFELAAQIRDMILEIKAMD

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=815700 RYQ61_RS08130 WP_102568053.1 1609551..1611539(+) (uvrB) [Streptococcus intermedius strain XH2169]
ATGATAAATAGAATTACGGACAATGAATTTAAGTTGGTTTCCAAGTATGAGCCGTCAGGAGATCAACCACAGGCGATTGA
GGAATTAGTTGACAATATTGAGGGTGGAGAGAAGGCCCAGATTCTCATGGGGGCGACCGGTACTGGTAAGACCTATACCA
TGAGTCAAGTTATTGCTCGAGTTAATAAACCGACTCTGGTTATCGCCCATAATAAAACGCTGGCTGGTCAGCTTTATGGT
GAGTTCAAGGAGTTCTTTCCAAATAATGCAGTAGAATATTTTGTTTCCTACTATGATTATTACCAACCGGAAGCCTATGT
ACCCTCTAGTGATACCTATATTGAAAAGGACAGCTCGGTCAATGACGAGATTGACAAACTCCGTCACTCAGCAACATCAG
CCCTCTTGGAGCGTAACGATGTGATTGTCGTGGCTTCGGTCTCGTGTATCTATGGTCTAGGTTCGCCTAAGGAATACTCT
GATAGCGTGGTTAGCCTACGTCCGGGTCTAGAAATTTCCCGAGATAAGCTACTCAATGATCTGGTAGATATCCAGTTTGA
GCGTAATGACATTGACTTTCAGCGGGGGAAATTCCGGGTTCGAGGCGATGTGGTGGAGATATTCCCAGCTTCTCGGGATG
AGCATGCCTTTCGGGTAGAGTTTTTTGGTGATGAGATTGACCGCATTCGAGAAGTAGAAGCGTTGACGGGACAAGTTTTG
GGTGAAGTGGACCATTTAGCAATTTTCCCTGCTACTCACTTTATGACAAATGACGAAAATATGGAGATTGCTATTGCTAA
AATTCAGGCGGAGCTGGAGCAGCAACTTGCTATCTTTGAGAAGGAAGGCAAGCTTTTGGAAGCTCAGCGCTTGAAGCAAC
GCACGGAGTATGACATCGAAATGCTTCGTGAAATGGGCTATACAAATGGCGTTGAGAACTATTCTCGCCACATGGATGGT
CGAAGCGAAGGAGAGCCTCCTTATACCCTTCTGGACTTTTTCCCAGACGATTTCTTGATTATGATTGACGAGAGTCACAT
GACCATGGGACAGATTCGCGGTATGTACAATGGTGACCGCTCTCGTAAGGAGATGCTGGTTAATTATGGCTTCCGCCTGC
CGTCTGCCTTGGACAACCGTCCGCTGCGCCGGGAGGAGTTTGAGAGTCATGTTCACCAGATTGTCTATGTATCGGCTACG
CCGGGTGACTATGAAAATGAACAGACGGATACTGTTATTGAGCAGATTATCCGGCCGACAGGGCTTCTGGATCCAGAGGT
GGAAGTCCGCCCAACTATGGGGCAGATTGATGACCTTTTGGGCGAAATTACTGCGCGTGCAGAGAAGAATGAGCGGACCT
TTATCACAACCCTGACCAAGAAGATGGCGGAAGATTTGACGGACTACTTCAAGGAAATGGGTGTCAAGGTCAAGTACATG
CACTCAGACATCAAGACTTTGGAACGGACTGAGATTATCCGAGACCTGCGCTTGGGTGTCTTTGACGTTCTGGTTGGGAT
TAACCTGCTGCGCGAGGGAATTGATGTACCTGAGGTTAGTCTGGTGGCAATTCTTGATGCAGACAAGGAAGGTTTTCTCC
GCAATGAACGTGGCCTGATCCAGACTATTGGCCGGGCAGCCCGCAACAGTGAGGGGCATGTGATTATGTATGCGGACACC
ATGACCCAGTCCATGCAGCGCGCTATTGATGAAACTGCCCGCCGTCGGGCGATCCAAATGGCTTATAATGAAGAGCATGG
TATCGTACCGCAGACCATCAAGAAAGAAATCCGGGACCTAATTAGCGTAACCAAGGCTGCCTTGCCAGACAAGGAAGAAA
CAGTCGAAATCGAAAGCCTTAACAAGCAAGAGCGCAAGGACATGATCAAGAAACTGGAAGGCCAAATGCAAGAAGCTGCC
GGACTCCTCGACTTTGAACTGGCCGCACAGATTCGTGATATGATTCTGGAAATTAAAGCGATGGATTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(443-549)

Ultra-violet resistance protein B (UvrB)

(556-598)

UvrB/uvrC motif (UVR)

(626-660)

UvrB interaction domain (UvrB_inter)

(164-254)

Type III restriction enzyme, res subunit (ResIII)

(17-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

93.505

100

0.935
  uvrB Streptococcus pneumoniae D39

93.505

100

0.935
  uvrB Streptococcus pneumoniae TIGR4

93.353

100

0.934