Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   R1Y80_RS07410 Genome accession   NZ_CP136798
Coordinates   1646531..1648660 (-) Length   709 a.a.
NCBI ID   WP_354596641.1    Uniprot ID   -
Organism   Streptomyces sp. JL1001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1641531..1653660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y80_RS07395 (R1Y80_07380) - 1642289..1643305 (-) 1017 WP_100565079.1 TerC family protein -
  R1Y80_RS07400 (R1Y80_07385) - 1643548..1645542 (-) 1995 WP_354596640.1 TerD family protein -
  R1Y80_RS07405 (R1Y80_07390) - 1645738..1646316 (-) 579 WP_032761469.1 TerD family protein -
  R1Y80_RS07410 (R1Y80_07395) uvrB 1646531..1648660 (-) 2130 WP_354596641.1 excinuclease ABC subunit UvrB Machinery gene
  R1Y80_RS07415 (R1Y80_07400) - 1648700..1649530 (-) 831 WP_150198202.1 MHYT domain-containing protein -
  R1Y80_RS07420 (R1Y80_07405) - 1649762..1650649 (+) 888 WP_354596642.1 glycerophosphodiester phosphodiesterase family protein -
  R1Y80_RS07425 (R1Y80_07410) - 1650718..1651275 (+) 558 WP_100565074.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  R1Y80_RS07430 (R1Y80_07415) - 1651272..1651796 (-) 525 WP_100565073.1 hypothetical protein -
  R1Y80_RS07435 (R1Y80_07420) - 1651929..1653218 (+) 1290 WP_354596643.1 MFS transporter -
  R1Y80_RS07440 (R1Y80_07425) - 1653293..1653655 (-) 363 WP_030713249.1 cupin domain-containing protein -

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 79915.61 Da        Isoelectric Point: 4.7978

>NTDB_id=815541 R1Y80_RS07410 WP_354596641.1 1646531..1648660(-) (uvrB) [Streptomyces sp. JL1001]
MRPVSKIERSVRPFEVVSPYQPSGDQPTAIAELERRIRADEKDVVLLGATGTGKSATTAWMIERLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVQLKVGEEIDRDQLLRRFVEMQYTRNDLAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIENLSTLHPLTG
EIISEDPTVHVFPASHYVAGPERMERAVSGIEQELEQRLAELEKQGKMLEAQRLRMRTTYDIEMLRQIGTCSGVENYSMH
FDDRAPGTAPNTLLDYFPDDFLLVLDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSAMDNRPLKWEEFLQRIDQTVYL
SATPGKYELSRGDGFVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRERTERDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKVTPAMEQAIDETNRRREKQIAYNTERGIDPQPLRKKINDIVATIAREEVDTEQLLGTGYRQGKETKAPVPALGGKAA
KGGAKGGAAKAGAVTGDRPATELAGIIEEMTDRMRAAAADLQFEVAARLRDEVGELKKELRQMKEAGMA

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=815541 R1Y80_RS07410 WP_354596641.1 1646531..1648660(-) (uvrB) [Streptomyces sp. JL1001]
ATGCGGCCCGTTTCCAAGATCGAACGTTCGGTGCGGCCTTTCGAGGTCGTCAGTCCCTACCAGCCCAGCGGCGACCAGCC
GACGGCCATCGCCGAGCTGGAGCGGCGAATCCGCGCCGATGAGAAGGACGTCGTCCTGCTCGGCGCGACCGGCACCGGAA
AGTCGGCGACCACCGCCTGGATGATCGAGAGGCTGCAGCGCCCCACCCTGGTGATGGCGCCGAACAAGACGCTCGCCGCC
CAGCTGGCCAACGAGTTCCGTGAGCTCCTCCCGAACAACGCGGTGGAGTATTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCCATCAACGAGGAGGTCGAGCGGCTGCGTCACT
CGGCGACGAATTCGCTGCTCACCCGGCGCGACGTCGTCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTCGGCACGCCC
CAGGAGTACGTGGACCGCATGGTCCAGCTCAAGGTCGGCGAGGAGATCGACCGCGACCAGCTGCTGCGCCGCTTCGTCGA
GATGCAGTACACCCGCAACGACCTGGCGTTCACCCGCGGCACCTTCCGGGTCCGGGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGAACCTGTCCACGCTCCACCCGCTCACCGGC
GAGATCATCAGCGAGGACCCCACGGTCCACGTCTTCCCCGCCAGCCACTACGTCGCCGGCCCCGAGCGCATGGAGCGGGC
CGTCAGCGGCATCGAGCAGGAGCTGGAGCAGCGCCTGGCCGAGCTGGAGAAGCAGGGCAAGATGCTGGAGGCCCAGCGCC
TGCGCATGCGCACCACGTACGACATCGAGATGCTCCGCCAGATCGGCACCTGCTCCGGCGTCGAGAACTACTCGATGCAT
TTCGACGACCGCGCGCCCGGCACCGCCCCCAACACCCTCCTCGACTACTTCCCGGACGACTTCCTGCTCGTCCTCGACGA
GTCCCACGTCACCGTCCCCCAGATCGGCGCGATGTACGAGGGGGACGCCTCCCGCAAGCGGACCCTCGTCGACCACGGCT
TCCGCCTGCCGTCCGCCATGGACAACCGGCCGCTGAAGTGGGAGGAGTTCCTGCAGCGGATCGACCAGACGGTGTATCTC
TCGGCCACCCCGGGGAAGTACGAGCTCTCGCGCGGCGACGGGTTCGTCGAGCAGATCATCCGCCCCACCGGTCTCGTCGA
CCCCGAGGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTCCACGAGATCCGCGAGCGCACCGAACGCGACG
AGCGGGTCCTGGTCACCACGCTCACCAAGAAGATGGCCGAGGATCTCACCGACTACTTCCTGGAGCTCGGCATCCAGGTC
CGCTATCTGCACAGCGACGTCGACACCCTGCGCCGCATCGAGCTGCTGCGCGAGCTGCGCTCCGGCGAGTACGACGTCCT
CGTCGGTATCAACCTGCTGCGCGAGGGCCTCGACCTCCCCGAGGTGTCCCTCGTGGCCATTCTCGACGCCGACAAGCAGG
GCTTCCTGCGCTCGGGCACCTCGCTCATCCAGACCATCGGCCGCGCCGCCCGTAACGTCTCCGGCCAGGTCCACATGTAC
GCCGACAAGGTCACCCCGGCCATGGAGCAGGCGATCGACGAGACGAACCGCCGCCGCGAGAAGCAGATCGCGTACAACAC
CGAGCGGGGTATCGACCCGCAGCCGCTGCGGAAGAAGATCAACGACATCGTCGCGACCATCGCCCGCGAGGAGGTCGACA
CCGAACAGCTCCTCGGCACCGGCTACCGGCAGGGCAAGGAGACCAAGGCCCCGGTCCCCGCGCTCGGGGGCAAGGCCGCC
AAGGGCGGGGCGAAGGGCGGGGCCGCCAAGGCCGGCGCGGTGACCGGCGACCGCCCCGCGACCGAACTGGCCGGGATCAT
CGAGGAGATGACCGACCGGATGCGGGCCGCCGCCGCGGACCTGCAGTTCGAGGTGGCCGCCCGGCTGCGCGACGAGGTCG
GTGAACTGAAGAAGGAACTGCGTCAGATGAAGGAAGCGGGCATGGCCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(441-551)

UvrB interaction domain (UvrB_inter)

(168-257)

Ultra-violet resistance protein B (UvrB)

(559-600)

Type III restriction enzyme, res subunit (ResIII)

(25-134)

UvrB/uvrC motif (UVR)

(667-699)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.105

97.038

0.544
  uvrB Streptococcus pneumoniae R6

56.105

97.038

0.544
  uvrB Streptococcus pneumoniae D39

56.105

97.038

0.544