Detailed information NTG0815224

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PA12_RS26760
• Genome accession: NZ_CP136598
• Coordinates: 5720268..5721140 (+)
• Length: 290 a.a.
• NCBI ID: WP_023084740.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PA12
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5715268..5726140

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PA12_RS26745 (PA12_gene5219)	pilA/pilAI	5716651..5717115 (-)	465	WP_211851992.1	pilin	Machinery gene
PA12_RS26750 (PA12_gene5220)	pilB	5717346..5719046 (+)	1701	WP_003107297.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PA12_RS26755 (PA12_gene5221)	pilC	5719050..5720267 (+)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
PA12_RS26760 (PA12_gene5222)	pilD	5720268..5721140 (+)	873	WP_023084740.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PA12_RS26765 (PA12_gene5223)	coaE	5721137..5721748 (+)	612	WP_003112838.1	dephospho-CoA kinase	-
PA12_RS26770 (PA12_gene5224)	yacG	5721745..5721945 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PA12_RS26775 (PA12_gene5225)	-	5721982..5722191 (-)	210	WP_003094660.1	hypothetical protein	-
PA12_RS26780 (PA12_gene5226)	-	5722297..5722986 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
PA12_RS26785 (PA12_gene5227)	-	5722983..5723453 (-)	471	WP_003094664.1	hypothetical protein	-
PA12_RS26790 (PA12_gene5228)	-	5723450..5723875 (-)	426	WP_009875877.1	GNAT family N-acetyltransferase	-
PA12_RS26795 (PA12_gene5229)	-	5724008..5724637 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
PA12_RS26800 (PA12_gene5230)	-	5724634..5725083 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
PA12_RS26805 (PA12_gene5231)	-	5725109..5725279 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31843.88 Da
• Isoelectric Point: 7.7068

>NTDB_id=815224 PA12_RS26760 WP_023084740.1 5720268..5721140(+) (pilD) [Pseudomonas aeruginosa strain PA12]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=815224 PA12_RS26760 WP_023084740.1 5720268..5721140(+) (pilD) [Pseudomonas aeruginosa strain PA12]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCCCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterProScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472