Detailed information NTG0081522

Bioinformatically predicted

Overview

• Name: comR
• Type: Regulator
• Locus tag: R8775_RS09345
• Genome accession: NZ_AP026915
• Coordinates: 1792900..1793799 (-)
• Length: 299 a.a.
• NCBI ID: WP_050115346.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain PZ900700005
• Function: activate transcription of comX (predicted from homology) Competence regulation

Genomic Context

Location: 1787900..1798799

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8775_RS09320 (PC0005_18220)	rsmA	1788230..1789102 (-)	873	WP_001216863.1	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	-
R8775_RS09325 (PC0005_18230)	-	1789233..1789541 (-)	309	WP_000333257.1	hypothetical protein	-
R8775_RS09330 (PC0005_18240)	-	1789534..1790175 (-)	642	WP_000565531.1	ABC transporter ATP-binding protein	-
R8775_RS09335 (PC0005_18250)	-	1790177..1792207 (-)	2031	WP_000825268.1	bacteriocin-associated integral membrane family protein	-
R8775_RS09340 (PC0005_18260)	-	1792284..1792580 (-)	297	WP_000815393.1	lactococcin 972 family bacteriocin	-
R8775_RS09345 (PC0005_18270)	comR	1792900..1793799 (-)	900	WP_050115346.1	helix-turn-helix transcriptional regulator	Regulator
R8775_RS09350 (PC0005_18280)	rnmV	1793871..1794431 (-)	561	WP_000660009.1	ribonuclease M5	-
R8775_RS09355 (PC0005_18290)	-	1794431..1795204 (-)	774	WP_000575633.1	TatD family hydrolase	-
R8775_RS09360 (PC0005_18300)	-	1795509..1796486 (-)	978	Protein_1835	DUF1542 domain-containing protein	-
R8775_RS09365 (PC0005_18310)	rpmH	1796692..1796826 (-)	135	WP_000831905.1	50S ribosomal protein L34	-
R8775_RS09370 (PC0005_18320)	-	1797234..1798187 (+)	954	WP_001155321.1	IS30-like element ISSpn8 family transposase	-

Sequence

Protein

• Length: 299 a.a.
• Molecular weight: 35298.10 Da
• Isoelectric Point: 4.8932

>NTDB_id=81522 R8775_RS09345 WP_050115346.1 1792900..1793799(-) (comR) [Streptococcus pneumoniae strain PZ900700005]
MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIAHRLGVPVYSLMPDFSALPPAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMPQIIEKEAYSINDMLL
IRLFFYQMLIRKDLAKFINQIEKLMLFLLEQKKVTQIENYFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQDY
QKKPLVFMFLWKQALRVERDFSLAESFYQSSKTFAKLIGDGFLVKKLTEEWQEDVKKYL

Nucleotide

• Length: 900 bp

>NTDB_id=81522 R8775_RS09345 WP_050115346.1 1792900..1793799(-) (comR) [Streptococcus pneumoniae strain PZ900700005]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAATTAGTCGTCCAGATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGACTATATTGCTCACC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTCCTGCTTATTTAGAATTGAAATACCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTACGATAAGAAGGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGCCTCAGATTATAGAAAAAGAAGCTTATTCAATAAATGATATGTTGTTG
ATTCGTTTGTTTTTTTATCAAATGCTCATTAGAAAAGATCTTGCCAAATTTATAAATCAAATCGAAAAGCTAATGCTCTT
TCTTTTGGAACAGAAGAAGGTAACTCAAATAGAGAATTACTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGTTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAGATTAT
CAAAAGAAACCTCTTGTATTTATGTTTTTGTGGAAGCAAGCATTAAGAGTAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAACATTTGCGAAGCTAATTGGAGATGGATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTCAAAAAATATTTATAA

Domains

Predicted by InterProScan.

• ComR tetratricopeptide (ComR_TPR) (70-291)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comR	Streptococcus suis P1/7	38.144	97.324	0.371
comR	Streptococcus suis 05ZYH33	38.144	97.324	0.371
comR	Streptococcus mutans UA159	37.415	98.328	0.368
comR	Streptococcus suis D9	36.12	100	0.361