Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   QA442_RS20430 Genome accession   NZ_CP121861
Coordinates   3940122..3941270 (-) Length   382 a.a.
NCBI ID   WP_095432789.1    Uniprot ID   -
Organism   Bacillus stercoris strain Mal05     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3935122..3946270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS20400 (QA442_20400) yclP 3935274..3936032 (-) 759 WP_095432788.1 petrobactin ABC transporter ATP-binding protein YclP -
  QA442_RS20405 (QA442_20405) yclO 3936026..3936973 (-) 948 WP_040084169.1 petrobactin ABC transporter permease YclO -
  QA442_RS20410 (QA442_20410) ceuB 3936966..3937916 (-) 951 WP_014662773.1 petrobactin ABC transporter permease YclN Machinery gene
  QA442_RS20415 (QA442_20415) - 3938301..3939665 (+) 1365 WP_069839855.1 aspartate kinase -
  QA442_RS20420 (QA442_20420) - 3939808..3939918 (+) 111 WP_040084173.1 YjcZ family sporulation protein -
  QA442_RS20425 (QA442_20425) phrC 3940016..3940138 (-) 123 WP_014662771.1 phosphatase RapC inhibitor PhrC Regulator
  QA442_RS20430 (QA442_20430) rapC 3940122..3941270 (-) 1149 WP_095432789.1 response regulator aspartate phosphatase RapC Regulator
  QA442_RS20435 (QA442_20435) yclK 3941433..3942854 (-) 1422 WP_095432790.1 two-component system sensor histidine kinase YclK -
  QA442_RS20440 (QA442_20440) yclJ 3942841..3943524 (-) 684 WP_041521471.1 two-component system response regulator YclJ -
  QA442_RS20445 (QA442_20445) - 3943737..3945212 (+) 1476 WP_095432791.1 ABC transporter permease -
  QA442_RS20450 (QA442_20450) - 3945228..3945908 (+) 681 WP_095432792.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45624.63 Da        Isoelectric Point: 4.8458

>NTDB_id=814939 QA442_RS20430 WP_095432789.1 3940122..3941270(-) (rapC) [Bacillus stercoris strain Mal05]
MKSGVIPSSAVGQKINEWYKYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALDMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIEYFEKAVSTFESSRIINSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFLESLYQDQPSEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=814939 QA442_RS20430 WP_095432789.1 3940122..3941270(-) (rapC) [Bacillus stercoris strain Mal05]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAAATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAAAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCACGAAACATTGACAGCAATCAGGCAGATCTTAAAGGGCTGCTCGACTATTACGTGAATTTTTT
CCGCGGGATGTATGAGTTTGATAAGCGGGAATTTATTTCTGCCATCACATACTATAAACAGGCGGAGAAAAAGCTTTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTCTACTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATCAAAAACGCCTATGAAATTTACGTGGAGCAAGAAACCTATAATGTGAGAATCATTCAATGCCATTT
CGTGTTCGGGGTTAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCGCGCCATTTCAAATTGGCACTCGATATGGCCC
AAGCGGAACAAAAAGCCCAGCTGGTCGGAAGAGCATACTACAATCTCGGATTATGCTATTACAATCAAGATCTTCTTGAC
CCTGCCATTGAGTACTTTGAAAAAGCGGTCTCCACGTTTGAAAGCAGCAGGATCATCAATTCTTTGCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACAGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGGAATCCCTATATCAGGATCAGCCCAGTGAAGAAGGA
ATCGAACGATGTTTTCAATACCTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAGTGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)

Tetratricopeptide repeat (TPR_12)

(223-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

98.168

100

0.982
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568