Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QA442_RS09335 Genome accession   NZ_CP121861
Coordinates   1785937..1787007 (+) Length   356 a.a.
NCBI ID   WP_095431688.1    Uniprot ID   -
Organism   Bacillus stercoris strain Mal05     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1780937..1792007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS09305 (QA442_09305) mgsR 1781331..1781711 (+) 381 WP_014664601.1 transcriptional regulator MgsR -
  QA442_RS09315 (QA442_09315) - 1781933..1782769 (+) 837 WP_095431691.1 STAS domain-containing protein -
  QA442_RS09320 (QA442_09320) - 1782819..1784147 (-) 1329 WP_095431740.1 hemolysin family protein -
  QA442_RS09325 (QA442_09325) corA 1784290..1785243 (+) 954 WP_279474190.1 magnesium transporter CorA -
  QA442_RS09330 (QA442_09330) - 1785306..1785724 (+) 419 Protein_1802 CBS domain-containing protein -
  QA442_RS09335 (QA442_09335) comGA 1785937..1787007 (+) 1071 WP_095431688.1 competence protein ComGA Machinery gene
  QA442_RS09340 (QA442_09340) comGB 1786994..1788031 (+) 1038 WP_095431687.1 competence type IV pilus assembly protein ComGB Machinery gene
  QA442_RS09345 (QA442_09345) comGC 1788045..1788341 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  QA442_RS09350 (QA442_09350) comGD 1788331..1788762 (+) 432 WP_095431686.1 competence type IV pilus minor pilin ComGD Machinery gene
  QA442_RS09355 (QA442_09355) comGE 1788746..1789087 (+) 342 WP_095431685.1 competence type IV pilus minor pilin ComGE Machinery gene
  QA442_RS09360 (QA442_09360) comGF 1789113..1789493 (+) 381 WP_095431684.1 competence type IV pilus minor pilin ComGF Machinery gene
  QA442_RS09365 (QA442_09365) comGG 1789494..1789868 (+) 375 WP_040082643.1 competence type IV pilus minor pilin ComGG Machinery gene
  QA442_RS09370 (QA442_09370) - 1789940..1790119 (+) 180 WP_014480252.1 YqzE family protein -
  QA442_RS09375 (QA442_09375) - 1790160..1790486 (-) 327 WP_014664589.1 YqzG/YhdC family protein -
  QA442_RS09380 (QA442_09380) tapA 1790758..1791513 (+) 756 WP_095431683.1 amyloid fiber anchoring/assembly protein TapA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40471.68 Da        Isoelectric Point: 9.1812

>NTDB_id=814901 QA442_RS09335 WP_095431688.1 1785937..1787007(+) (comGA) [Bacillus stercoris strain Mal05]
MDSIEKISKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRNMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=814901 QA442_RS09335 WP_095431688.1 1785937..1787007(+) (comGA) [Bacillus stercoris strain Mal05]
TTGGATTCAATAGAAAAGATAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATCGTGCC
GAGGGAGCGAGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTAAAAAAAAGGAACATGAAAAAAGAAGAGTGCG
TAAGACTGATTTCACATTTTAAATTTCTTTCTGCAATGGACATAGGGGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTTCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCTCAATACAATATCCCTTCGATTGATAAACTGTCGTTATTTCCAAAGACAGGAGCCACATTACTCTCATTTTTAA
AACACTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAC
GCAAAAAAACACTTTAATCGAAATATTGTTACATTAGAGGACCCTGTTGAAACTAGGGACGAAGACGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAGGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGATGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTGACGAGCCTTCAT
ACGAGAGATGCAAAGGGCGCAATTTACAGGCTGCTTGAATTCGGTATCAATATGAATGAAATTGAACAGACCGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGTCCATTTTGTGAAAACGGATGTTCATCAGTATATTGCCGTCAGTCAC
GAAATACCAGAAGAGCTAGCGTTTATGAGCTTCTTTATGGGAAAAACCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACACTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

99.438

100

0.994