Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QA442_RS05905 Genome accession   NZ_CP121861
Coordinates   1143291..1143935 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus stercoris strain Mal05     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1138291..1148935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS05875 (QA442_05875) - 1138707..1139075 (-) 369 WP_014665193.1 hypothetical protein -
  QA442_RS05880 (QA442_05880) - 1139190..1139315 (-) 126 WP_128422565.1 hypothetical protein -
  QA442_RS05885 (QA442_05885) degQ 1139537..1139677 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  QA442_RS05890 (QA442_05890) - 1139861..1140721 (+) 861 WP_095431805.1 polyprenyl synthetase family protein -
  QA442_RS05895 (QA442_05895) comX 1140734..1140898 (+) 165 WP_014665191.1 competence pheromone ComX -
  QA442_RS05900 (QA442_05900) comP 1140910..1143210 (+) 2301 WP_251198651.1 histidine kinase Regulator
  QA442_RS05905 (QA442_05905) comA 1143291..1143935 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  QA442_RS05910 (QA442_05910) - 1143954..1144334 (+) 381 WP_040081970.1 hotdog fold thioesterase -
  QA442_RS05915 (QA442_05915) mnhG 1144373..1144747 (-) 375 WP_014665188.1 monovalent cation/H(+) antiporter subunit G -
  QA442_RS05920 (QA442_05920) - 1144731..1145015 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  QA442_RS05925 (QA442_05925) - 1145015..1145491 (-) 477 WP_014665187.1 Na+/H+ antiporter subunit E -
  QA442_RS05930 (QA442_05930) - 1145497..1146978 (-) 1482 WP_095431803.1 Na+/H+ antiporter subunit D -
  QA442_RS05935 (QA442_05935) - 1146971..1147312 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  QA442_RS05940 (QA442_05940) - 1147312..1147743 (-) 432 WP_014665185.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=814888 QA442_RS05905 WP_003220716.1 1143291..1143935(+) (comA) [Bacillus stercoris strain Mal05]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=814888 QA442_RS05905 WP_003220716.1 1143291..1143935(+) (comA) [Bacillus stercoris strain Mal05]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGTGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTGCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCACTTGAGCAAGCGGTCCATTGAATA
CAGCCTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1