Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QBS25_RS04490 Genome accession   NZ_CP121859
Coordinates   921998..922870 (+) Length   290 a.a.
NCBI ID   WP_274160613.1    Uniprot ID   -
Organism   Aeromonas veronii strain LOID 15995     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 916998..927870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS25_RS04470 nadC 917131..917994 (+) 864 WP_268011569.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QBS25_RS04475 - 918310..918744 (+) 435 WP_274160612.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QBS25_RS04480 pilB 918748..920454 (+) 1707 WP_139411606.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS25_RS04485 pilC 920695..921936 (+) 1242 WP_005336136.1 type II secretion system F family protein Machinery gene
  QBS25_RS04490 pilD 921998..922870 (+) 873 WP_274160613.1 A24 family peptidase Machinery gene
  QBS25_RS04495 coaE 922884..923498 (+) 615 WP_201947199.1 dephospho-CoA kinase -
  QBS25_RS04500 zapD 923536..924258 (+) 723 WP_005336141.1 cell division protein ZapD -
  QBS25_RS04505 yacG 924268..924462 (+) 195 WP_120416066.1 DNA gyrase inhibitor YacG -
  QBS25_RS04510 mutT 924540..924944 (-) 405 WP_042053534.1 8-oxo-dGTP diphosphatase MutT -
  QBS25_RS04515 secA 925129..927849 (-) 2721 WP_128816090.1 preprotein translocase subunit SecA -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32161.39 Da        Isoelectric Point: 6.8283

>NTDB_id=814848 QBS25_RS04490 WP_274160613.1 921998..922870(+) (pilD) [Aeromonas veronii strain LOID 15995]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFASDEEATAPERYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLASGFVPLADAVSGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALHKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTML

Nucleotide


Download         Length: 873 bp        

>NTDB_id=814848 QBS25_RS04490 WP_274160613.1 921998..922870(+) (pilD) [Aeromonas veronii strain LOID 15995]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTGGTCATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAGTATCGCAGCTACTTCG
CCTCTGATGAGGAGGCCACTGCGCCAGAGCGCTACAACCTGATGGTGCCGCGCTCCGCATGCCCTCACTGTGGCCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGTTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTACTGACCGCCCTGCTCTCGGTGGCCGTAGCCATGGTCATAACACCGGGCTGGGGCA
CACTGGCCGCCCTATTGCTGACCTGGGTGCTGGTCGCCCTTACCTTCATCGATCTCGACAAGATGTTGCTGCCCGACCAG
CTCACCCTGCCACTGCTGTGGGGCGGGCTGCTGTTCAATCTGGCAAGTGGCTTCGTCCCCTTGGCTGATGCAGTGAGCGG
CGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAGCTGCTAACAGGCAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCCCTG
GTCGGCGCCGTGATCGGCATCAGTCTGATCGCCTTGCACAAACACCATCAGGGCAAGCCAATCCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATCGCCCTGCTGTGGGGCGATACCATCACCCGCTGGTATCTCTCTACCATGCTTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Type IV leader peptidase family (Peptidase_A24)

(139-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

59.93

98.966

0.593
  pilD Vibrio campbellii strain DS40M4

55.401

98.966

0.548
  pilD Acinetobacter baumannii D1279779

53.047

96.207

0.51
  pilD Acinetobacter nosocomialis M2

53.047

96.207

0.51
  pilD Neisseria gonorrhoeae MS11

48.913

95.172

0.466