Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QBS20_RS01765 Genome accession   NZ_CP121843
Coordinates   354042..354914 (-) Length   290 a.a.
NCBI ID   WP_107684318.1    Uniprot ID   A0A2T4MXS2
Organism   Aeromonas veronii strain ANYA 16549     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 349042..359914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS20_RS01740 secA 349063..351783 (+) 2721 WP_107684322.1 preprotein translocase subunit SecA -
  QBS20_RS01745 mutT 351968..352372 (+) 405 WP_107684321.1 8-oxo-dGTP diphosphatase MutT -
  QBS20_RS01750 yacG 352450..352644 (-) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  QBS20_RS01755 zapD 352654..353376 (-) 723 WP_005336141.1 cell division protein ZapD -
  QBS20_RS01760 coaE 353414..354028 (-) 615 WP_107684319.1 dephospho-CoA kinase -
  QBS20_RS01765 pilD 354042..354914 (-) 873 WP_107684318.1 A24 family peptidase Machinery gene
  QBS20_RS01770 pilC 354976..356217 (-) 1242 WP_005355091.1 type II secretion system F family protein Machinery gene
  QBS20_RS01775 pilB 356457..358163 (-) 1707 WP_005336134.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS20_RS01780 - 358167..358631 (-) 465 WP_107684404.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QBS20_RS01785 nadC 358960..359823 (-) 864 WP_139730941.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32228.51 Da        Isoelectric Point: 6.3694

>NTDB_id=814624 QBS20_RS01765 WP_107684318.1 354042..354914(-) (pilD) [Aeromonas veronii strain ANYA 16549]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFTPDEEATAPECYNLMVPRSACPHCGHA
ITALENIPLLSWIWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWSTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTDKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
IGAVIGISLIALHKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=814624 QBS20_RS01765 WP_107684318.1 354042..354914(-) (pilD) [Aeromonas veronii strain ANYA 16549]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTGGTCATCCACCGCTTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATATCGCAGCTACTTCA
CCCCTGATGAGGAGGCCACTGCGCCAGAGTGCTACAACCTGATGGTGCCGCGCTCCGCATGCCCTCACTGTGGCCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGTTGAGCTGGATCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTCTCGGTGGCCGTTGCCATGGTCATAACGCCAGGCTGGAGCA
CACTGGCCGCCCTGCTGCTGACCTGGGTGCTGGTCGCCCTCACCTTCATCGATCTCGACAAAATGTTGCTGCCCGACCAG
CTCACCCTGCCACTGCTGTGGGGCGGGCTGCTGTTCAATCTGGCTGGTGGCTTCGTGCCGCTGGCGGATGCCGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTCACTGACAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGTTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCCCTG
ATCGGCGCAGTGATCGGCATCAGTCTGATCGCCTTGCACAAACACCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATCGCCCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4MXS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

59.441

98.621

0.586
  pilD Vibrio campbellii strain DS40M4

55.052

98.966

0.545
  pilD Acinetobacter nosocomialis M2

52.688

96.207

0.507
  pilD Acinetobacter baumannii D1279779

52.33

96.207

0.503
  pilD Neisseria gonorrhoeae MS11

50

93.103

0.466