Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QBS02_RS06625 Genome accession   NZ_CP121835
Coordinates   1445075..1445947 (+) Length   290 a.a.
NCBI ID   WP_279506146.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 18462     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1440075..1450947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS02_RS06605 nadC 1440164..1441036 (+) 873 WP_279506144.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QBS02_RS06610 - 1441367..1441822 (+) 456 WP_201943837.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QBS02_RS06615 pilB 1441826..1443532 (+) 1707 WP_005336134.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS02_RS06620 pilC 1443772..1445013 (+) 1242 WP_005336136.1 type II secretion system F family protein Machinery gene
  QBS02_RS06625 pilD 1445075..1445947 (+) 873 WP_279506146.1 A24 family peptidase Machinery gene
  QBS02_RS06630 coaE 1445961..1446575 (+) 615 WP_279506148.1 dephospho-CoA kinase -
  QBS02_RS06635 zapD 1446613..1447335 (+) 723 WP_005336141.1 cell division protein ZapD -
  QBS02_RS06640 yacG 1447345..1447539 (+) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  QBS02_RS06645 mutT 1447617..1448021 (-) 405 WP_019444787.1 8-oxo-dGTP diphosphatase MutT -
  QBS02_RS06650 secA 1448096..1450816 (-) 2721 WP_150389839.1 preprotein translocase subunit SecA -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32077.29 Da        Isoelectric Point: 6.8283

>NTDB_id=814491 QBS02_RS06625 WP_279506146.1 1445075..1445947(+) (pilD) [Aeromonas veronii strain ANYA 18462]
MTLLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFSPDEEATAPERYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGSVPLADAVSGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQVLPIILLLSSL
VGAVIGISLIALHKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=814491 QBS02_RS06625 WP_279506146.1 1445075..1445947(+) (pilD) [Aeromonas veronii strain ANYA 18462]
ATGACACTTCTTCTCGAGCTGGCTCACGGCTTGCCATGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTAGTGATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCGCAGCTACTTTT
CCCCCGATGAGGAGGCCACTGCACCAGAGCGCTACAACCTGATGGTGCCGCGCTCCGCATGTCCTCACTGTGGCCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGCTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTCTCGGTGGCCGTTGCCATGGTCATAACGCCGGGCTGGGGGA
CGCTGGCCGCCCTGCTGCTGACCTGGGTGCTGGTCGCCCTTACCTTTATCGATCTCGACAAGATGTTGCTGCCCGACCAA
CTCACCCTGCCACTGCTGTGGGGCGGGCTGCTGTTCAATCTGGCAGGTGGCTCCGTCCCCTTGGCTGATGCAGTGAGCGG
CGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAGCTGCTAACCGGCAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGTGCTGCCCATAATTCTGCTGCTCTCATCTCTG
GTCGGCGCCGTGATCGGCATCAGTCTGATCGCCTTGCACAAACACCATCAGGGCAAGCCCATTCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATCGCCCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

60.49

98.621

0.597
  pilD Vibrio campbellii strain DS40M4

56.098

98.966

0.555
  pilD Acinetobacter baumannii D1279779

54.478

92.414

0.503
  pilD Acinetobacter nosocomialis M2

54.478

92.414

0.503
  pilD Neisseria gonorrhoeae MS11

48.872

91.724

0.448