Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QBS21_RS00980 Genome accession   NZ_CP121817
Coordinates   195373..196245 (-) Length   290 a.a.
NCBI ID   WP_107684318.1    Uniprot ID   A0A2T4MXS2
Organism   Aeromonas veronii strain ANYA 19170     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 190373..201245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS21_RS00955 secA 190394..193114 (+) 2721 WP_107684322.1 preprotein translocase subunit SecA -
  QBS21_RS00960 mutT 193299..193703 (+) 405 WP_107684321.1 8-oxo-dGTP diphosphatase MutT -
  QBS21_RS00965 yacG 193781..193975 (-) 195 WP_107684320.1 DNA gyrase inhibitor YacG -
  QBS21_RS00970 zapD 193985..194707 (-) 723 WP_005336141.1 cell division protein ZapD -
  QBS21_RS00975 coaE 194745..195359 (-) 615 WP_107684319.1 dephospho-CoA kinase -
  QBS21_RS00980 pilD 195373..196245 (-) 873 WP_107684318.1 A24 family peptidase Machinery gene
  QBS21_RS00985 pilC 196307..197548 (-) 1242 WP_005355091.1 type II secretion system F family protein Machinery gene
  QBS21_RS00990 pilB 197789..199495 (-) 1707 WP_005336134.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS21_RS00995 - 199499..199963 (-) 465 WP_107684404.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QBS21_RS01000 nadC 200292..201155 (-) 864 WP_043821973.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32228.51 Da        Isoelectric Point: 6.3694

>NTDB_id=814407 QBS21_RS00980 WP_107684318.1 195373..196245(-) (pilD) [Aeromonas veronii strain ANYA 19170]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFTPDEEATAPECYNLMVPRSACPHCGHA
ITALENIPLLSWIWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWSTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTDKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
IGAVIGISLIALHKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=814407 QBS21_RS00980 WP_107684318.1 195373..196245(-) (pilD) [Aeromonas veronii strain ANYA 19170]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTGGTCATCCACCGCTTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATATCGCAGCTACTTCA
CCCCTGATGAGGAGGCCACTGCGCCAGAGTGCTACAACCTGATGGTGCCGCGCTCCGCATGCCCTCACTGTGGCCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGTTGAGCTGGATCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTCTCGGTGGCCGTTGCCATGGTCATAACGCCAGGCTGGAGCA
CACTGGCCGCCCTGCTGCTGACCTGGGTGCTGGTCGCCCTCACCTTCATCGATCTCGACAAAATGTTGCTGCCCGACCAG
CTCACCCTGCCACTGCTGTGGGGCGGGCTGCTGTTCAATCTGGCTGGTGGCTTCGTGCCGCTGGCGGATGCCGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTCACTGACAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGTTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCCCTG
ATCGGCGCAGTGATCGGCATCAGTCTGATCGCCTTGCACAAACACCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATCGCCCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4MXS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

59.441

98.621

0.586
  pilD Vibrio campbellii strain DS40M4

55.052

98.966

0.545
  pilD Acinetobacter nosocomialis M2

52.688

96.207

0.507
  pilD Acinetobacter baumannii D1279779

52.33

96.207

0.503
  pilD Neisseria gonorrhoeae MS11

50

93.103

0.466