Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QBS05_RS01880 Genome accession   NZ_CP121795
Coordinates   357489..358361 (+) Length   290 a.a.
NCBI ID   WP_095591547.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain DAMIAN 12594     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 352489..363361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS05_RS01860 nadC 352784..353641 (+) 858 WP_094697628.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QBS05_RS01865 - 353963..354403 (+) 441 WP_010635961.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QBS05_RS01870 pilB 354394..356109 (+) 1716 WP_185450531.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS05_RS01875 pilC 356225..357466 (+) 1242 WP_010635960.1 type II secretion system F family protein Machinery gene
  QBS05_RS01880 pilD 357489..358361 (+) 873 WP_095591547.1 A24 family peptidase Machinery gene
  QBS05_RS01885 coaE 358381..358995 (+) 615 WP_005305656.1 dephospho-CoA kinase -
  QBS05_RS01890 zapD 359033..359755 (+) 723 WP_010635957.1 cell division protein ZapD -
  QBS05_RS01895 yacG 359765..359959 (+) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  QBS05_RS01900 mutT 360021..360434 (-) 414 WP_279463625.1 8-oxo-dGTP diphosphatase MutT -
  QBS05_RS01905 - 360443..361621 (-) 1179 WP_279462438.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32465.81 Da        Isoelectric Point: 6.7410

>NTDB_id=814249 QBS05_RS01880 WP_095591547.1 357489..358361(+) (pilD) [Aeromonas dhakensis strain DAMIAN 12594]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLSYFNPETQLQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFPPGWALLAALLLTWGLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGISLILLRNHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=814249 QBS05_RS01880 WP_095591547.1 357489..358361(+) (pilD) [Aeromonas dhakensis strain DAMIAN 12594]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTTTCGCTGGTATTCCTCTTCTCCCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTACCCATCATGCTGGAACGGGAGTGGCAGGCCGAATACCTCAGCTATTTCA
ACCCAGAGACACAACTGCAGCAGGAGGAACGCTACAACCTGATGGTGCCGCGTTCCGCCTGCCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAATATCCCCCTACTCAGCTGGCTCTGGCTCAAGGGTCGCTGCCGTGAATGTCAGGCCCCCATCTC
GGCCCGTTATCCGCTGGTGGAGCTGCTGACAGCCCTGCTCTCGCTGGTCGTCGCCGCAACATTCCCACCGGGCTGGGCTT
TGCTGGCCGCCCTGCTGCTCACCTGGGGGCTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTGACCCTGCCATTGCTGTGGGGCGGCCTGCTGTTCAATCTGGCAGGGGGATTCGTTCCGCTGGCCGATGCGGTGATCGG
CGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTACG
GCGACTTCAAGCTGCTGGCGGCGCTGGGGGCCTGGCTGGGCTGGCAGGCCCTGCCCATCGTGCTGCTGCTTTCCTCCCTG
GTCGGCGCCATCATAGGGATAAGTCTCATCCTGCTGCGCAACCATCATCAGGGCAAACCCATCCCCTTCGGGCCCTACCT
GGCGATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Type IV leader peptidase family (Peptidase_A24)

(139-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

61.888

98.621

0.61
  pilD Vibrio campbellii strain DS40M4

58.131

99.655

0.579
  pilD Acinetobacter baumannii D1279779

54.225

97.931

0.531
  pilD Acinetobacter nosocomialis M2

54.225

97.931

0.531
  pilD Neisseria gonorrhoeae MS11

49.084

94.138

0.462