Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QBS29_RS09305 Genome accession   NZ_CP121794
Coordinates   1318494..1319369 (-) Length   291 a.a.
NCBI ID   WP_266109638.1    Uniprot ID   -
Organism   Aeromonas caviae strain FIONA 16800     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1313494..1324369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS29_RS09280 - 1315241..1316425 (+) 1185 WP_266109633.1 tetratricopeptide repeat protein -
  QBS29_RS09285 mutT 1316434..1316838 (+) 405 WP_171864957.1 8-oxo-dGTP diphosphatase MutT -
  QBS29_RS09290 yacG 1316896..1317090 (-) 195 WP_039040499.1 DNA gyrase inhibitor YacG -
  QBS29_RS09295 zapD 1317101..1317823 (-) 723 WP_010675825.1 cell division protein ZapD -
  QBS29_RS09300 coaE 1317861..1318475 (-) 615 WP_113978310.1 dephospho-CoA kinase -
  QBS29_RS09305 pilD 1318494..1319369 (-) 876 WP_266109638.1 A24 family peptidase Machinery gene
  QBS29_RS09310 pilC 1319447..1320688 (-) 1242 WP_010675822.1 type II secretion system F family protein Machinery gene
  QBS29_RS09315 pilB 1320816..1322531 (-) 1716 WP_176722689.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS29_RS09320 - 1322522..1322923 (-) 402 WP_279474298.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QBS29_RS09325 nadC 1323234..1324097 (-) 864 WP_041213995.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32099.24 Da        Isoelectric Point: 6.8280

>NTDB_id=814223 QBS29_RS09305 WP_266109638.1 1318494..1319369(-) (pilD) [Aeromonas caviae strain FIONA 16800]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERTWHAEYSDYFGDGEETPPATGRYNLMMPRSRCPHCDH
PIGALENIPLLSWLWLRGRCRNCHAPISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADGVVGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=814223 QBS29_RS09305 WP_266109638.1 1318494..1319369(-) (pilD) [Aeromonas caviae strain FIONA 16800]
ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGTCTGCCCATCATGATGGAGAGGACCTGGCATGCCGAATACAGCGACTATTTCG
GTGACGGTGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGATGCCTCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCGCTGGAGAACATTCCCCTGCTGAGCTGGCTATGGCTCAGGGGGCGCTGCCGCAACTGCCACGCCCCCAT
TTCGGCTCGCTATCCCCTGGTCGAGCTGCTCACCGCCCTGCTATCGGTCTCGGTAGCAGCCGCGCTTGCCCCCGGCTGGG
GCACCCTTGCCGCTCTGCTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTCTGGGGTGGCCTGCTGTTCAATCTGGCAGGCGGTTTCGTGCCCCTGGCCGATGGGGTGGT
CGGCGCCATGGCGGGTTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCT
ATGGCGACTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCTTCG
CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCCTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(140-248)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

60.417

98.969

0.598
  pilD Vibrio campbellii strain DS40M4

56.552

99.656

0.564
  pilD Acinetobacter baumannii D1279779

51.971

95.876

0.498
  pilD Acinetobacter nosocomialis M2

51.971

95.876

0.498
  pilD Neisseria gonorrhoeae MS11

51.341

89.691

0.46