Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   QAY87_RS23690 Genome accession   NZ_CP121766
Coordinates   5001854..5003191 (+) Length   445 a.a.
NCBI ID   WP_285230727.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 22112     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4996854..5008191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY87_RS23665 (QAY87_23660) pgeF 4996997..4997725 (-) 729 WP_023435616.1 peptidoglycan editing factor PgeF -
  QAY87_RS23670 (QAY87_23665) rluD 4997722..4998684 (-) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QAY87_RS23675 (QAY87_23670) - 4998830..4999855 (+) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  QAY87_RS23680 (QAY87_23675) - 5000012..5000257 (+) 246 WP_003102591.1 PP0621 family protein -
  QAY87_RS23685 (QAY87_23680) pilS 5000247..5001839 (+) 1593 WP_285230726.1 two-component system sensor histidine kinase PilS Regulator
  QAY87_RS23690 (QAY87_23685) pilR 5001854..5003191 (+) 1338 WP_285230727.1 two-component system response regulator PilR Regulator
  QAY87_RS23695 (QAY87_23690) thiO 5003237..5004331 (-) 1095 WP_023435615.1 glycine oxidase ThiO -
  QAY87_RS23700 (QAY87_23695) - 5004471..5004971 (+) 501 WP_023435614.1 GspH/FimT family pseudopilin -
  QAY87_RS23705 (QAY87_23700) - 5005094..5005582 (+) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  QAY87_RS23710 (QAY87_23705) pilV 5005592..5006116 (+) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  QAY87_RS23715 (QAY87_23710) - 5006125..5006940 (+) 816 WP_016562347.1 PilW family protein -
  QAY87_RS23720 (QAY87_23715) - 5006937..5007542 (+) 606 WP_003116263.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49828.16 Da        Isoelectric Point: 6.6639

>NTDB_id=814052 QAY87_RS23690 WP_285230727.1 5001854..5003191(+) (pilR) [Pseudomonas aeruginosa strain 22112]
MSRQKALIVDDEPDIRELLEITLGRKKRDPRRARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLADRI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=814052 QAY87_RS23690 WP_285230727.1 5001854..5003191(+) (pilR) [Pseudomonas aeruginosa strain 22112]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCAAGAA
GCGGGACCCCCGCCGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGCAGCGGCAAGGAACTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GTGCTATCGAAGACAAGCAGGGCCTGTTCCAAGCCGCCAGCGGTGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGATCGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAGAATATGCTGGAGCGCGCCTACACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCGGCGAGCCTGAGCGAAATCGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTATCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

98.876

100

0.989
  pilR Acinetobacter baumannii strain A118

50.763

100

0.524
  luxO Vibrio cholerae strain A1552

39.618

94.157

0.373