Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   MTS17_RS16865 Genome accession   NZ_CP121625
Coordinates   3453060..3453443 (+) Length   127 a.a.
NCBI ID   WP_000389061.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain JAB144     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3448222..3452989 3453060..3453443 flank 71


Gene organization within MGE regions


Location: 3448222..3453443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTS17_RS16835 (MTS17_16835) - 3448770..3448771 (-) 2 WP_085947913.1 IS4-like element ISAba1 family transposase -
  MTS17_RS16840 (MTS17_16840) - 3449353..3449745 (+) 393 WP_002017443.1 type IIL restriction-modification enzyme MmeI -
  MTS17_RS16845 (MTS17_16845) - 3449753..3450208 (+) 456 Protein_3279 DEAD/DEAH box helicase family protein -
  MTS17_RS16850 (MTS17_16850) - 3450208..3450867 (+) 660 Protein_3280 ATP-binding protein -
  MTS17_RS16855 (MTS17_16855) - 3450972..3451793 (-) 822 WP_001046004.1 OXA-23 family carbapenem-hydrolyzing class D beta-lactamase OXA-23 -
  MTS17_RS16860 (MTS17_16860) - 3451899..3452989 (+) 1091 WP_087486612.1 IS4-like element ISAba1 family transposase -
  MTS17_RS16865 (MTS17_16865) pilG 3453060..3453443 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14200.23 Da        Isoelectric Point: 4.5762

>NTDB_id=813536 MTS17_RS16865 WP_000389061.1 3453060..3453443(+) (pilG) [Acinetobacter baumannii strain JAB144]
MEDAFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQNYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVSS

Nucleotide


Download         Length: 384 bp        

>NTDB_id=813536 MTS17_RS16865 WP_000389061.1 3453060..3453443(+) (pilG) [Acinetobacter baumannii strain JAB144]
ATGGAAGATGCATTCCAAAATCTGAAAGTAATGGTTATTGATGACTCAAAAACTATTCGCCGTACCGCAGAAACTCTATT
GCAACGCGAAGGTTGCGAAGTGATTACTGCTGTCGATGGATTTGAAGCTTTATCTAAAATTGCTGAAGCGAATCCGGATA
TTGTTTTTGTAGATATCATGATGCCTCGTTTAGACGGTTATCAAACTTGTGCTCTGATTAAGAACTCTCAAAATTATCAG
AACATTCCCGTTATCATGCTCTCTAGTAAAGATGGTTTATTTGATCAGGCAAAAGGGCGTGTGGTAGGTTCAGATGAATA
CTTGACGAAACCTTTTAGCAAAGATGAATTGCTAAATGCGATTCGTAATCATGTAAGTTCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

100

100

1
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.593

88.976

0.37