Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RWV42_RS04560 Genome accession   NZ_CP136173
Coordinates   972276..974297 (+) Length   673 a.a.
NCBI ID   WP_001004983.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABO21-A049     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 967276..979297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWV42_RS04535 (RWV42_04535) - 967575..967985 (+) 411 WP_001014258.1 GFA family protein -
  RWV42_RS04540 (RWV42_04540) - 968037..969272 (-) 1236 WP_002069248.1 pyridoxal phosphate-dependent aminotransferase -
  RWV42_RS04545 (RWV42_04545) - 969480..969659 (+) 180 WP_000139632.1 hypothetical protein -
  RWV42_RS04550 (RWV42_04550) - 969694..971130 (-) 1437 WP_114189906.1 diguanylate cyclase domain-containing protein -
  RWV42_RS04555 (RWV42_04555) - 971305..972096 (-) 792 WP_000222202.1 hypothetical protein -
  RWV42_RS04560 (RWV42_04560) uvrB 972276..974297 (+) 2022 WP_001004983.1 excinuclease ABC subunit UvrB Machinery gene
  RWV42_RS04565 (RWV42_04565) - 974391..974978 (+) 588 WP_000885644.1 lipocalin family protein -
  RWV42_RS04570 (RWV42_04570) rarD 975087..976034 (+) 948 WP_014466252.1 EamA family transporter RarD -
  RWV42_RS04575 (RWV42_04575) - 976251..977708 (+) 1458 WP_000031228.1 glyceraldehyde-3-phosphate dehydrogenase -
  RWV42_RS04580 (RWV42_04580) - 977857..978591 (+) 735 WP_001183838.1 hypothetical protein -
  RWV42_RS04585 (RWV42_04585) - 978603..979277 (+) 675 WP_002069149.1 hypothetical protein -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 77278.03 Da        Isoelectric Point: 5.3381

>NTDB_id=813458 RWV42_RS04560 WP_001004983.1 972276..974297(+) (uvrB) [Acinetobacter baumannii strain ABO21-A049]
MNENQPFDLVTHYQPAGDQPQAIEKLVNGIEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMAHNKTLAAQLYGEFK
AFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRLSATRALLERRDAIIVASVSAIYGLGDPNAYMQML
LHVVQGDRVSRDEIIRRLVEMQYTRNELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKV
PRVTIYPKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTNGIENYSRHLSGRPA
GEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNYGFRLPSALDNRPMKFEEWERIVPTTIFVSATPAR
YELEKSEQVVEQVVRPTGLIDPEIEVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSD
IDTVERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVKGKAILYADTITD
SMRKAIDETERRRAKQIEFNEQHGITPRSAVRQAVKEIDTGEVLSDDQIDEKVLEQAQALSADERHILSDPKLFSKHITK
LEKEMLKASKDLQFEQAARIRDEIVRLKAQMLQ

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=813458 RWV42_RS04560 WP_001004983.1 972276..974297(+) (uvrB) [Acinetobacter baumannii strain ABO21-A049]
GTGAACGAAAATCAACCTTTCGATTTGGTCACTCATTACCAGCCAGCGGGTGATCAGCCACAGGCAATTGAAAAGCTGGT
GAATGGTATCGAAAAGGGTTTTCGTAATCAGTTACTGCTAGGTGTGACCGGTTCAGGTAAGACCTATACCATGGCAAATG
TGATTGCCCAAACTCAGCGCCCGACGATTGTGATGGCGCATAATAAGACCTTGGCAGCCCAGCTCTATGGTGAGTTTAAA
GCCTTCTTCCCAAACAATGCAGTTGAGTATTTCGTAAGTTATTACGATTACTATCAACCCGAGGCTTATGTTCCGTCGTC
AGATACATTTATTGAAAAAGACGCGGCAATTAATGACCATATTGACCAGATGCGATTATCGGCAACGCGTGCTTTGTTAG
AACGTCGTGATGCGATTATTGTTGCTTCTGTTTCGGCCATTTATGGTTTGGGTGACCCAAATGCTTATATGCAAATGTTA
TTGCATGTGGTCCAAGGTGACCGAGTAAGTCGAGACGAAATTATTCGCCGTTTGGTTGAAATGCAATATACACGTAATGA
GCTTGAATTCTTACGTGGTACGTATCGTATCCGTGGTGAAATTATTGATATTTTCCCGGCAGAATCCGACCAACATGCGA
TTCGTATTGAACTCTTTGATGACGAAGTAGACTCAATTCGCTGGTTTGATCCGCTTACCGGTAAAATGGTCCGCAAAGTA
CCACGTGTCACGATTTACCCGAAAAGCCATTATGTGACGCCAAAAGACAACCTAACACGAGCTATCGATACCATTAAGGA
TGAATTGCAAGACCAGCTTAAGTTCTTCCGTGAACATGACAAGTTACTCGAAGCGCAGCGTATCGAGCAACGTACTCGTT
ATGATTTGGAAATGATGCAGCAGTTAGGCTACACCAATGGTATCGAAAACTACTCACGTCATTTATCGGGACGACCGGCA
GGGGAAGCACCACCGACTTTATTTGACTATGTACCAGAAGATGCCTTACTTATTATCGATGAGTCGCATGTAACGGTTCC
TCAAATTGGCGCAATGTATAAAGGTGACCGTTCGCGTAAAGAAAACTTGGTGAATTACGGTTTCCGTTTACCAAGTGCGC
TTGATAACCGCCCAATGAAATTTGAAGAGTGGGAGCGTATTGTTCCGACCACTATTTTTGTGAGTGCCACACCAGCTAGA
TATGAACTGGAAAAATCAGAACAAGTGGTTGAGCAGGTTGTTCGACCAACAGGCTTGATTGATCCTGAAATTGAAGTTCG
TCCTGTACTTACCCAAGTCGATGATGTTTTGTCTGAGATTAACATTCGTAAAAACTTAAATGAGCGTGTATTGGTAACGA
CTTTAACCAAGCGTATGGCGGAAGATTTAACTTCTTATTTAAAAGAATATGGCGTTAAGGTTGCATACCTGCACTCGGAT
ATTGATACAGTTGAACGTGTCAAAATTATTCATGAATTACGTACAGGCGTATTTGATGTACTAGTGGGTATTAACTTGCT
GCGAGAAGGCCTAGATATGCCGGAAGTTTCTTTAGTTGCTATTTTAGATGCAGATAAAGAAGGTTTCTTACGTTCTGAGC
GTTCGCTTATTCAGACGATTGGTCGTGCTGCGCGAAATGTGAAAGGTAAAGCAATTTTATATGCTGATACAATCACTGAT
TCTATGCGAAAGGCAATTGATGAGACAGAGCGCCGACGTGCAAAACAAATCGAGTTTAATGAGCAGCATGGTATTACGCC
ACGTAGTGCAGTTCGTCAGGCTGTGAAAGAAATTGATACGGGTGAAGTACTTTCTGATGATCAGATTGATGAGAAAGTAC
TAGAGCAGGCACAAGCACTTAGCGCAGATGAACGACATATTCTTTCTGACCCTAAATTGTTTAGTAAGCATATTACTAAG
TTAGAGAAAGAAATGTTAAAGGCATCGAAGGATTTACAATTCGAGCAAGCGGCGCGTATTCGTGATGAAATTGTTCGTTT
AAAAGCGCAAATGTTGCAATAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(161-251)

UvrB/uvrC motif (UVR)

(638-670)

Type III restriction enzyme, res subunit (ResIII)

(17-89)

Helicase conserved C-terminal domain (Helicase_C)

(442-545)

Ultra-violet resistance protein B (UvrB)

(553-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.997

99.406

0.577
  uvrB Streptococcus pneumoniae R6

57.997

99.406

0.577
  uvrB Streptococcus pneumoniae D39

57.997

99.406

0.577