Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   QA624_RS08525 Genome accession   NZ_CP121526
Coordinates   1445971..1446687 (+) Length   238 a.a.
NCBI ID   WP_001829999.1    Uniprot ID   C0LF82
Organism   Staphylococcus epidermidis strain 1FSE05     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1440971..1451687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA624_RS08500 - 1442371..1443156 (+) 786 WP_002469371.1 carbon-nitrogen family hydrolase -
  QA624_RS08505 hld 1443537..1443614 (-) 78 WP_002494082.1 delta-hemolysin -
  QA624_RS08510 - 1443931..1444494 (+) 564 WP_002457915.1 accessory gene regulator AgrB -
  QA624_RS08515 - 1444500..1444640 (+) 141 WP_002447513.1 cyclic lactone autoinducer peptide -
  QA624_RS08520 - 1444665..1445954 (+) 1290 WP_002457064.1 GHKL domain-containing protein -
  QA624_RS08525 agrA 1445971..1446687 (+) 717 WP_001829999.1 LytTR family DNA-binding domain-containing protein Regulator
  QA624_RS08530 - 1446755..1447714 (-) 960 WP_002457063.1 carbohydrate kinase -
  QA624_RS08535 - 1447721..1449193 (-) 1473 WP_001830011.1 sucrose-6-phosphate hydrolase -
  QA624_RS08540 - 1449453..1450406 (-) 954 WP_002457062.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27936.97 Da        Isoelectric Point: 5.6250

>NTDB_id=812766 QA624_RS08525 WP_001829999.1 1445971..1446687(+) (agrA) [Staphylococcus epidermidis strain 1FSE05]
MKIFVCEDDQRQREHMVSIIKNYIMIEEKPMELALATNDPYEVLEQSKELNDIGCYFLDIQLEADMNGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPSELKMRIIDCLETAHTRLKLLSKESNVDTIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSFVINRHNIESIDSKERIVYFKNGENCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=812766 QA624_RS08525 WP_001829999.1 1445971..1446687(+) (agrA) [Staphylococcus epidermidis strain 1FSE05]
ATGAAAATTTTTGTTTGTGAAGATGACCAAAGACAAAGAGAACATATGGTATCAATCATTAAAAACTACATAATGATTGA
AGAAAAGCCAATGGAGTTAGCTTTAGCAACAAATGATCCTTATGAGGTCTTAGAGCAATCAAAAGAACTTAATGACATTG
GTTGTTACTTCCTTGATATTCAATTAGAAGCTGATATGAACGGTATTAAATTAGCCAGTGAAATTCGTAAACATGATCCT
GTTGGTAATATTATATTTGTAACCAGTCACAGTGAGCTGACTTATTTGACGTTTGTTTATAAAGTGGCTGCTATGGATTT
TATTTTTAAAGATGATCCATCTGAATTAAAAATGAGAATCATAGATTGTCTCGAAACAGCACATACACGACTCAAATTAT
TATCAAAAGAAAGTAATGTAGATACGATTGAGTTAAAGCGGGGAAGTAATTCAGTATACGTTCAATATGATGATATTATG
TTTTTTGAATCATCTACGAAATCTCATAGGCTCATTGCACATCTTGATAATCGACAAATTGAATTTTATGGAAATTTAAA
GGAATTAGCACAGCTTGATGAACGTTTCTTTAGATGTCATAACAGTTTTGTGATAAACAGGCATAATATTGAATCTATTG
ACTCAAAAGAACGTATTGTTTACTTTAAGAATGGCGAAAATTGTTTCGCTTCAGTACGTAATGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0LF82

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

87.815

100

0.878
  comE/comE2 Streptococcus gordonii strain NCTC7865

35.178

100

0.374
  comE/comE1 Streptococcus gordonii str. Challis substr. CH1

35.178

100

0.374