Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QA594_RS04165 Genome accession   NZ_CP121518
Coordinates   902221..902730 (+) Length   169 a.a.
NCBI ID   WP_001831333.1    Uniprot ID   A0A2G7I1N0
Organism   Staphylococcus epidermidis strain 6DSE07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 897221..907730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA594_RS04135 - 898002..898877 (+) 876 WP_070501577.1 mechanosensitive ion channel family protein -
  QA594_RS04140 - 898898..899101 (+) 204 WP_001831361.1 DUF951 domain-containing protein -
  QA594_RS04145 ychF 899113..900210 (+) 1098 WP_070501579.1 redox-regulated ATPase YchF -
  QA594_RS04150 - 900443..900634 (-) 192 WP_001831355.1 hypothetical protein -
  QA594_RS04155 - 900708..901517 (-) 810 WP_002470454.1 GH25 family lysozyme -
  QA594_RS04160 rpsF 901902..902198 (+) 297 WP_001831345.1 30S ribosomal protein S6 -
  QA594_RS04165 ssbA 902221..902730 (+) 510 WP_001831333.1 single-stranded DNA-binding protein Machinery gene
  QA594_RS04170 rpsR 902775..903017 (+) 243 WP_001831354.1 30S ribosomal protein S18 -
  QA594_RS04175 - 903210..903373 (-) 164 Protein_819 XRE family transcriptional regulator -
  QA594_RS04180 - 903487..903747 (-) 261 WP_001830921.1 hypothetical protein -
  QA594_RS04185 - 903969..904223 (+) 255 WP_001832461.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  QA594_RS04190 - 904445..904534 (-) 90 Protein_822 hypothetical protein -
  QA594_RS04195 - 904697..905329 (+) 633 WP_070501581.1 LysE family translocator -
  QA594_RS04200 - 905350..905940 (+) 591 WP_070501583.1 histidine phosphatase family protein -
  QA594_RS04205 - 906413..906790 (-) 378 WP_002437185.1 hypothetical protein -
  QA594_RS04210 - 907010..907633 (-) 624 WP_002437175.1 NDxxF motif lipoprotein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18680.20 Da        Isoelectric Point: 4.9056

>NTDB_id=812682 QA594_RS04165 WP_001831333.1 902221..902730(+) (ssbA) [Staphylococcus epidermidis strain 6DSE07]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=812682 QA594_RS04165 WP_001831333.1 902221..902730(+) (ssbA) [Staphylococcus epidermidis strain 6DSE07]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAGTTCCTTGAACCTAAAAA
TGCACAACATGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G7I1N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

55.172

100

0.568
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.722

0.379