Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   RS960_RS07965 Genome accession   NZ_CP135966
Coordinates   1636624..1637226 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain ST5477     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1631624..1642226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS960_RS07945 (RS960_07945) yajC 1633120..1633380 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  RS960_RS07950 (RS960_07950) tgt 1633399..1634538 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  RS960_RS07955 (RS960_07955) queA 1634561..1635586 (-) 1026 WP_262538601.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  RS960_RS07960 (RS960_07960) ruvB 1635588..1636592 (-) 1005 WP_317528611.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RS960_RS07965 (RS960_07965) ruvA 1636624..1637226 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  RS960_RS07970 (RS960_07970) - 1637240..1637695 (-) 456 WP_000368902.1 ACT domain-containing protein -
  RS960_RS07975 (RS960_07975) obgE 1637708..1639000 (-) 1293 WP_000496098.1 GTPase ObgE -
  RS960_RS07980 (RS960_07980) rpmA 1639486..1639770 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  RS960_RS07985 (RS960_07985) - 1639782..1640102 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  RS960_RS07990 (RS960_07990) rplU 1640108..1640416 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  RS960_RS07995 (RS960_07995) mreD 1640583..1641113 (-) 531 WP_001259927.1 rod shape-determining protein MreD -
  RS960_RS08000 (RS960_08000) mreC 1641113..1641955 (-) 843 WP_000911041.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=812591 RS960_RS07965 WP_000271547.1 1636624..1637226(-) (ruvA) [Staphylococcus aureus strain ST5477]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=812591 RS960_RS07965 WP_000271547.1 1636624..1637226(-) (ruvA) [Staphylococcus aureus strain ST5477]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTGGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTACTTTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCATTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425