Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   QA588_RS05225 Genome accession   NZ_CP121507
Coordinates   1129919..1130635 (-) Length   238 a.a.
NCBI ID   WP_001829999.1    Uniprot ID   C0LF82
Organism   Staphylococcus epidermidis strain 23DSE01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1124919..1135635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA588_RS05210 - 1126200..1127153 (+) 954 WP_002457062.1 LacI family DNA-binding transcriptional regulator -
  QA588_RS05215 - 1127413..1128885 (+) 1473 WP_001830011.1 sucrose-6-phosphate hydrolase -
  QA588_RS05220 - 1128892..1129851 (+) 960 WP_002457063.1 carbohydrate kinase -
  QA588_RS05225 agrA 1129919..1130635 (-) 717 WP_001829999.1 LytTR family DNA-binding domain-containing protein Regulator
  QA588_RS05230 - 1130652..1131941 (-) 1290 WP_002457064.1 GHKL domain-containing protein -
  QA588_RS05235 - 1131966..1132106 (-) 141 WP_002447513.1 cyclic lactone autoinducer peptide -
  QA588_RS05240 - 1132112..1132675 (-) 564 WP_002457915.1 accessory gene regulator AgrB -
  QA588_RS05245 hld 1132992..1133069 (+) 78 WP_002494082.1 delta-hemolysin -
  QA588_RS05250 - 1133450..1134235 (-) 786 WP_002469371.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27936.97 Da        Isoelectric Point: 5.6250

>NTDB_id=812581 QA588_RS05225 WP_001829999.1 1129919..1130635(-) (agrA) [Staphylococcus epidermidis strain 23DSE01]
MKIFVCEDDQRQREHMVSIIKNYIMIEEKPMELALATNDPYEVLEQSKELNDIGCYFLDIQLEADMNGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPSELKMRIIDCLETAHTRLKLLSKESNVDTIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSFVINRHNIESIDSKERIVYFKNGENCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=812581 QA588_RS05225 WP_001829999.1 1129919..1130635(-) (agrA) [Staphylococcus epidermidis strain 23DSE01]
ATGAAAATTTTTGTTTGTGAAGATGACCAAAGACAAAGAGAACATATGGTATCAATCATTAAAAACTACATAATGATTGA
AGAAAAGCCAATGGAGTTAGCTTTAGCAACAAATGATCCTTATGAGGTCTTAGAGCAATCAAAAGAACTTAATGACATTG
GTTGTTACTTCCTTGATATTCAATTAGAAGCTGATATGAACGGTATTAAATTAGCCAGTGAAATTCGTAAACATGATCCT
GTTGGTAATATTATATTTGTAACCAGTCACAGTGAGCTGACTTATTTGACGTTTGTTTATAAAGTGGCTGCTATGGATTT
TATTTTTAAAGATGATCCATCTGAATTAAAAATGAGAATCATAGATTGTCTCGAAACAGCACATACACGACTCAAATTAT
TATCAAAAGAAAGTAATGTAGATACGATTGAGTTAAAGCGGGGAAGTAATTCAGTATACGTTCAATATGATGATATTATG
TTTTTTGAATCATCTACGAAATCTCATAGGCTCATTGCACATCTTGATAATCGACAAATTGAATTTTATGGAAATTTAAA
GGAATTAGCACAGCTTGATGAACGTTTCTTTAGATGTCATAACAGTTTTGTGATAAACAGGCATAATATTGAATCTATTG
ACTCAAAAGAACGTATTGTTTACTTTAAGAATGGCGAAAATTGTTTCGCTTCAGTACGTAATGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0LF82

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

87.815

100

0.878
  comE/comE2 Streptococcus gordonii strain NCTC7865

35.178

100

0.374
  comE/comE1 Streptococcus gordonii str. Challis substr. CH1

35.178

100

0.374