Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QA591_RS04635 Genome accession   NZ_CP121486
Coordinates   988967..989473 (+) Length   168 a.a.
NCBI ID   WP_002494616.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain 32FSE02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 983967..994473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA591_RS04605 - 984748..985623 (+) 876 WP_001832526.1 mechanosensitive ion channel family protein -
  QA591_RS04610 - 985644..985847 (+) 204 WP_001831361.1 DUF951 domain-containing protein -
  QA591_RS04615 ychF 985859..986956 (+) 1098 WP_001831336.1 redox-regulated ATPase YchF -
  QA591_RS04620 - 987189..987380 (-) 192 WP_001831355.1 hypothetical protein -
  QA591_RS04625 - 987454..988263 (-) 810 WP_002470454.1 GH25 family lysozyme -
  QA591_RS04630 rpsF 988648..988944 (+) 297 WP_001831345.1 30S ribosomal protein S6 -
  QA591_RS04635 ssbA 988967..989473 (+) 507 WP_002494616.1 single-stranded DNA-binding protein Machinery gene
  QA591_RS04640 rpsR 989513..989755 (+) 243 WP_001831354.1 30S ribosomal protein S18 -
  QA591_RS04645 - 989948..990111 (-) 164 Protein_910 XRE family transcriptional regulator -
  QA591_RS04650 - 990225..990485 (-) 261 WP_001830921.1 hypothetical protein -
  QA591_RS04655 - 990707..990961 (+) 255 WP_001832461.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  QA591_RS04660 - 991433..992065 (+) 633 WP_001830914.1 LysE family translocator -
  QA591_RS04665 - 992086..992676 (+) 591 WP_002456826.1 histidine phosphatase family protein -
  QA591_RS04670 - 992977..993354 (-) 378 WP_002437185.1 hypothetical protein -
  QA591_RS04675 - 993574..994197 (-) 624 WP_002456828.1 NDxxF motif lipoprotein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18566.10 Da        Isoelectric Point: 4.9056

>NTDB_id=812481 QA591_RS04635 WP_002494616.1 988967..989473(+) (ssbA) [Staphylococcus epidermidis strain 32FSE02]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNSSNSNQSDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=812481 QA591_RS04635 WP_002494616.1 988967..989473(+) (ssbA) [Staphylococcus epidermidis strain 32FSE02]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAATTCCTTGAACCTAAAAA
CGCACAACATGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTATAACAACAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATTGAT
ATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.453

100

0.655
  ssb Latilactobacillus sakei subsp. sakei 23K

55.172

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

63.095

0.381