Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QA590_RS07520 Genome accession   NZ_CP121483
Coordinates   1591405..1591914 (-) Length   169 a.a.
NCBI ID   WP_001831333.1    Uniprot ID   A0A2G7I1N0
Organism   Staphylococcus epidermidis strain 32FSE07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1586572..1593427 1591405..1591914 within 0


Gene organization within MGE regions


Location: 1586572..1593427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA590_RS07485 - 1586572..1587183 (-) 612 WP_080356898.1 terminase small subunit -
  QA590_RS07490 - 1587356..1587928 (+) 573 WP_021298885.1 helix-turn-helix transcriptional regulator -
  QA590_RS07495 - 1587958..1588434 (+) 477 WP_021298890.1 hypothetical protein -
  QA590_RS07500 - 1588436..1588669 (+) 234 WP_049376666.1 hypothetical protein -
  QA590_RS07505 - 1588693..1589912 (+) 1220 Protein_1434 site-specific integrase -
  QA590_RS07510 - 1589917..1590924 (+) 1008 WP_049376668.1 Abi family protein -
  QA590_RS07515 rpsR 1591118..1591360 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  QA590_RS07520 ssbA 1591405..1591914 (-) 510 WP_001831333.1 single-stranded DNA-binding protein Machinery gene
  QA590_RS07525 rpsF 1591937..1592233 (-) 297 WP_001831345.1 30S ribosomal protein S6 -
  QA590_RS07530 - 1592618..1593427 (+) 810 WP_002503286.1 GH25 family lysozyme -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18680.20 Da        Isoelectric Point: 4.9056

>NTDB_id=812461 QA590_RS07520 WP_001831333.1 1591405..1591914(-) (ssbA) [Staphylococcus epidermidis strain 32FSE07]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=812461 QA590_RS07520 WP_001831333.1 1591405..1591914(-) (ssbA) [Staphylococcus epidermidis strain 32FSE07]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAGTTCCTTGAACCTAAAAA
CGCACAACATGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTATAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G7I1N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

55.172

100

0.568
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.722

0.379