Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   MY015_RS01890 Genome accession   NZ_AP026907
Coordinates   406847..407479 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain MY732     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 401847..412479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY015_RS01865 (MY016_03650) yhfG 401979..402146 (+) 168 WP_128995334.1 YhfG family protein -
  MY015_RS01870 (MY016_03660) fic 402136..402738 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  MY015_RS01875 (MY016_03670) pabA 402770..403333 (+) 564 WP_000601844.1 aminodeoxychorismate synthase component 2 -
  MY015_RS01880 (MY016_03680) argD 403419..404639 (+) 1221 WP_000963785.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  MY015_RS01885 (MY016_03690) yhfK 404706..406796 (-) 2091 WP_001345983.1 YccS/YhfK family putative transporter -
  MY015_RS01890 (MY016_03700) crp 406847..407479 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  MY015_RS01895 (MY016_03710) yhfA 407781..408185 (+) 405 WP_001148908.1 OsmC family protein -
  MY015_RS01900 (MY016_03720) prkB 408240..409109 (-) 870 WP_001274680.1 phosphoribulokinase -
  MY015_RS01905 (MY016_03730) yheU 409163..409381 (-) 219 WP_000907085.1 YheU family protein -
  MY015_RS01910 (MY016_03740) yheT 409375..410397 (-) 1023 WP_000057356.1 hydrolase -
  MY015_RS01915 (MY016_03750) yheS 410397..412310 (-) 1914 WP_000634793.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=81245 MY015_RS01890 WP_000242755.1 406847..407479(-) (crp) [Escherichia coli strain MY732]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=81245 MY015_RS01890 WP_000242755.1 406847..407479(-) (crp) [Escherichia coli strain MY732]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGACAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment