Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   Thiowin_RS00110 Genome accession   NZ_CP121472
Coordinates   23823..25241 (-) Length   472 a.a.
NCBI ID   WP_328985728.1    Uniprot ID   -
Organism   Thiorhodovibrio winogradskyi strain DSM 6702     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 18823..30241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Thiowin_RS00090 (Thiowin_00018) thiS 20772..20972 (+) 201 WP_328988169.1 sulfur carrier protein ThiS -
  Thiowin_RS00095 (Thiowin_00019) - 21042..21449 (-) 408 WP_328985725.1 globin domain-containing protein -
  Thiowin_RS00100 (Thiowin_00020) djlA 21578..22414 (+) 837 WP_328985726.1 co-chaperone DjlA -
  Thiowin_RS00105 (Thiowin_00021) argA 22439..23848 (-) 1410 WP_328985727.1 amino-acid N-acetyltransferase -
  Thiowin_RS00110 (Thiowin_00022) pilR 23823..25241 (-) 1419 WP_328985728.1 sigma-54 dependent transcriptional regulator Regulator
  Thiowin_RS00115 (Thiowin_00023) - 25265..25492 (-) 228 WP_328985729.1 hypothetical protein -
  Thiowin_RS00120 (Thiowin_00025) prfH 26377..27006 (+) 630 WP_328985730.1 peptide chain release factor H -
  Thiowin_RS00125 (Thiowin_00026) - 27270..27518 (-) 249 WP_328985731.1 zinc-finger domain-containing protein -
  Thiowin_RS00130 (Thiowin_00027) - 27558..28478 (-) 921 WP_328985732.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 50451.08 Da        Isoelectric Point: 6.1259

>NTDB_id=812311 Thiowin_RS00110 WP_328985728.1 23823..25241(-) (pilR) [Thiorhodovibrio winogradskyi strain DSM 6702]
MPKAAAKPKARALVVDDEPDILDLVRITLARMGLEAQCVGTLKAARQALAGDRFDICLTDMRLPDGDGTALVRHASTRYP
EMPVAMMTAYGNMESAVAAMKAGAFDFVSKPLDLRVLRELTTAALRARGRGGEPADESMGPQAKLIGESPQILELRTLIA
KLARNQAPVFISGESGTGKELAASLIHQLGPRADQPFVPVNCGAIPADLVESELFGHRKGSFTGASSDKPGLFQAAQGGT
LFLDEIADLPLPMQVKLLRAIQEKSVRPVGAAKEVPVNVRIISASHLNLVDAVARGSFRQDLFYRINVIDLHLPPLRERV
GDIPVLVAYLLPRIAAESGSPAASLDQDAMAALRDYAFPGNVRELENILERASALCESPELSLADLRLPEPRQMGAPIAS
RATSAAPLASPPPATESTLADRLDAIEQQLLAEALHACGQDSQSAAERLGLSPRAFHLHMEMTSNVQPPKRP

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=812311 Thiowin_RS00110 WP_328985728.1 23823..25241(-) (pilR) [Thiorhodovibrio winogradskyi strain DSM 6702]
ATGCCCAAGGCCGCCGCCAAGCCCAAAGCCCGCGCGCTGGTTGTCGATGACGAACCCGATATTCTCGACCTGGTGCGCAT
CACCCTTGCCCGCATGGGGCTGGAGGCCCAGTGCGTCGGCACCCTGAAGGCTGCCCGCCAGGCGCTCGCCGGTGATCGCT
TTGACATCTGCCTGACCGACATGCGCTTGCCCGATGGCGATGGCACCGCTCTGGTGCGCCATGCCAGCACGCGCTATCCC
GAGATGCCAGTGGCCATGATGACGGCCTATGGCAACATGGAATCCGCCGTCGCGGCGATGAAAGCCGGTGCCTTTGACTT
TGTCTCCAAGCCGCTCGACCTGCGGGTATTGCGTGAGCTGACCACTGCTGCCCTGCGCGCGCGCGGGCGTGGTGGCGAGC
CCGCGGATGAGAGCATGGGTCCACAAGCCAAACTCATTGGCGAATCGCCGCAAATTCTTGAACTGCGCACCCTGATCGCC
AAACTTGCGCGCAATCAGGCACCGGTGTTCATTAGTGGCGAGAGTGGCACCGGCAAGGAGCTGGCGGCCAGCCTGATTCA
TCAGCTCGGCCCGCGCGCCGATCAGCCCTTTGTGCCAGTCAACTGTGGCGCCATCCCGGCCGATCTGGTCGAGAGCGAGC
TCTTTGGCCATCGCAAGGGCAGCTTCACCGGCGCGAGCAGCGACAAACCGGGGCTGTTCCAGGCGGCCCAGGGAGGCACC
CTGTTTCTTGATGAAATCGCCGACCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAGAAAAGCGTGCG
CCCAGTCGGCGCCGCCAAGGAGGTGCCGGTGAATGTGCGCATTATTAGCGCCAGTCATCTCAACCTGGTCGATGCCGTTG
CCCGGGGTTCTTTTCGTCAGGATCTGTTTTACCGTATCAACGTCATCGATCTGCATCTGCCGCCACTGCGCGAGCGGGTT
GGCGACATCCCCGTTCTGGTTGCCTATCTGCTGCCACGCATCGCCGCCGAGTCAGGCAGCCCGGCCGCGAGTCTTGACCA
AGACGCCATGGCGGCACTGCGCGATTACGCCTTTCCTGGCAATGTGCGCGAGTTGGAGAATATTCTAGAGCGCGCCAGCG
CCCTGTGCGAGTCGCCGGAGCTGAGTCTCGCCGATCTGCGCCTGCCTGAACCACGGCAGATGGGCGCCCCCATAGCGAGC
CGAGCCACTAGCGCCGCCCCGCTGGCCAGCCCGCCGCCAGCGACCGAGTCTACGCTGGCCGACCGCCTTGATGCCATCGA
ACAACAGCTATTGGCCGAGGCACTGCACGCGTGTGGTCAGGATTCGCAGAGCGCGGCCGAGCGACTGGGACTCTCTCCGC
GCGCCTTTCATCTGCATATGGAAATGACCTCAAATGTCCAACCCCCAAAGCGGCCATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(13-119)

Sigma-54 interaction domain (Sigma54_activat)

(145-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

55.188

95.975

0.53
  pilR Acinetobacter baumannii strain A118

47.894

95.551

0.458
  luxO Vibrio cholerae strain A1552

37.611

95.763

0.36