Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   P8P68_RS08780 Genome accession   NZ_CP121467
Coordinates   1802571..1804553 (+) Length   660 a.a.
NCBI ID   WP_049477778.1    Uniprot ID   A0A1X1HH26
Organism   Streptococcus sp. D7B5     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1797571..1809553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8P68_RS08755 (P8P68_08755) - 1797766..1798818 (+) 1053 WP_061852902.1 hypothetical protein -
  P8P68_RS08760 (P8P68_08760) rfbA 1798890..1799759 (+) 870 WP_000676122.1 glucose-1-phosphate thymidylyltransferase RfbA -
  P8P68_RS08765 (P8P68_08765) - 1799760..1800353 (+) 594 WP_278275883.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -
  P8P68_RS08770 (P8P68_08770) rfbB 1800372..1801418 (+) 1047 WP_084880423.1 dTDP-glucose 4,6-dehydratase -
  P8P68_RS08775 (P8P68_08775) rfbD 1801479..1802333 (-) 855 WP_084880425.1 dTDP-4-dehydrorhamnose reductase -
  P8P68_RS08780 (P8P68_08780) amiA3 1802571..1804553 (+) 1983 WP_049477778.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73335.60 Da        Isoelectric Point: 4.5642

>NTDB_id=812262 P8P68_RS08780 WP_049477778.1 1802571..1804553(+) (amiA3) [Streptococcus sp. D7B5]
MKSSKLLALAGVTLLAAATLAACSGSSSNAKGEKTFSYIYETDPDNLNYLTTGKAATANITSNVIDGLLENDRYGNFVPS
MAEDWSVSKDGLTYTYTLRKDAKWYTSEGEEYAEVKAQDFVTGLKYAADKKSDGLYLVQESIKGLDAYVKGEITDFSQVG
IKALDDYTVQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFAKGTDPSSILYNGPFLLKSIVAKSSVEFEKNPNYWD
KDNVHLDKVKLSFWDGQDTNKPTEAFKDGSFTMARLFPTSASYSETEKTFKDNIVYTQQDSTTYLVGTNIDRQSYKYTSK
TTDEEKASTKKALLNKDFRQAIAFGFDRTAYASQVNGASGATKLLRNLFVPPTFVQADGKNFGELVKEKLVTYGDEWSNV
NLDDAQDGLYNPDKAKAEFAKAKAALQAEGVKFPIHLDMPVDQTNTTKVQRVQSFKQSVEENLGSDNVVIDIQQLQKDDV
QNITYFAETAAGEDWDISDNVGWSPDYIDPSTYLDIIKPSVGENTKTYLGFDSGTNNAAAKQVGLEDYEKMVVEAGEETT
DVSKRYEKYAAAQAWLTDSALLIPTTSQTGRPMLSKMVPFTLPFAYSGNKGMSEALLYKYLEVQDKAVTTDEYQKAQEKW
LKEKEESNKKAQEELANHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=812262 P8P68_RS08780 WP_049477778.1 1802571..1804553(+) (amiA3) [Streptococcus sp. D7B5]
ATGAAAAGTTCAAAACTACTTGCCCTTGCGGGTGTGACGTTATTGGCAGCTGCAACTCTTGCGGCCTGCTCTGGATCAAG
TTCAAATGCTAAAGGTGAGAAAACATTCTCATACATTTACGAAACGGATCCTGATAACCTAAACTATTTGACAACTGGTA
AGGCAGCTACAGCAAATATTACTAGTAACGTTATCGATGGCTTACTTGAAAATGACCGCTATGGGAACTTTGTACCATCT
ATGGCTGAGGATTGGTCTGTATCTAAGGATGGATTGACTTACACGTATACACTCCGAAAGGATGCAAAATGGTATACATC
TGAAGGTGAGGAGTATGCAGAAGTTAAAGCTCAAGACTTTGTAACTGGTCTTAAGTATGCTGCTGATAAGAAATCAGATG
GTCTTTACCTGGTTCAGGAATCTATCAAGGGATTGGATGCTTACGTCAAAGGAGAAATTACAGATTTTTCTCAAGTAGGA
ATCAAAGCTCTTGATGATTATACCGTTCAATACACATTGAACAAGCCAGAAAGTTTCTGGAATTCTAAGACAACAATGGG
TGTTCTGGCTCCTGTTAATGAAGAATTTTTGAACTCTAAAGGGGATGACTTTGCTAAAGGTACGGACCCAAGCAGCATTC
TCTATAATGGACCATTCTTACTCAAATCAATCGTAGCCAAATCATCAGTCGAGTTCGAAAAGAATCCAAACTATTGGGAC
AAAGACAATGTCCATCTTGATAAAGTGAAATTATCCTTCTGGGATGGTCAAGATACTAATAAGCCAACTGAAGCTTTCAA
AGACGGTAGCTTTACAATGGCTCGTCTCTTCCCAACAAGTGCTAGTTACTCAGAGACTGAAAAAACATTCAAAGACAATA
TCGTTTATACCCAACAAGATTCTACTACTTATTTAGTAGGCACAAATATCGATCGCCAGTCTTATAAGTACACTTCTAAG
ACAACAGATGAGGAAAAAGCATCAACCAAGAAGGCCCTTTTGAATAAGGACTTCCGTCAAGCTATTGCATTTGGTTTTGA
TAGAACAGCCTACGCTTCTCAAGTAAATGGTGCAAGCGGGGCTACTAAACTGCTTCGTAACTTATTTGTTCCTCCTACAT
TTGTACAGGCAGATGGGAAAAACTTTGGGGAATTAGTTAAAGAAAAATTGGTGACCTATGGAGATGAGTGGAGCAACGTA
AACTTGGATGATGCCCAAGATGGACTCTACAATCCTGACAAAGCCAAAGCAGAATTCGCTAAAGCTAAGGCGGCCCTTCA
AGCGGAAGGTGTGAAATTCCCAATCCACTTGGATATGCCTGTAGATCAAACCAATACAACAAAAGTTCAACGTGTTCAAT
CTTTTAAACAGTCAGTTGAAGAAAATCTAGGATCAGATAATGTGGTTATCGATATCCAACAGCTTCAAAAAGATGATGTT
CAAAACATTACCTACTTCGCTGAAACTGCGGCTGGAGAAGACTGGGATATCTCAGATAACGTGGGTTGGTCTCCAGACTA
TATCGATCCATCTACTTATCTTGATATTATCAAGCCTTCTGTAGGAGAAAACACGAAAACATATCTAGGATTTGATTCTG
GGACAAACAACGCTGCCGCTAAGCAAGTTGGTTTAGAAGATTACGAAAAAATGGTTGTGGAAGCTGGTGAAGAAACCACT
GATGTTTCAAAACGTTATGAGAAATATGCTGCTGCCCAAGCTTGGTTGACAGACAGTGCCTTGCTCATCCCAACAACTTC
TCAAACTGGTCGTCCAATGTTGTCTAAGATGGTGCCATTTACACTTCCATTTGCATACTCTGGTAACAAGGGTATGAGTG
AAGCCCTTTTGTACAAATATCTAGAAGTACAAGATAAAGCCGTGACAACAGACGAATACCAAAAGGCTCAAGAAAAATGG
TTGAAAGAAAAAGAAGAGTCAAATAAAAAGGCCCAAGAAGAACTCGCAAACCATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1HH26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

60.212

100

0.603
  amiA Streptococcus salivarius strain HSISS4

59.758

100

0.598
  amiA3 Streptococcus thermophilus LMG 18311

59.607

100

0.597