Detailed information NTG0081218

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PSm6_RS19525
• Genome accession: NZ_AP023081
• Coordinates: 4281893..4284115 (+)
• Length: 740 a.a.
• NCBI ID: WP_265167999.1
• Uniprot ID: -
• Organism: Pseudomonas solani strain Sm006
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	4281893..4296444	4281893..4284115	within	0

Gene organization within MGE regions

Location: 4281893..4296444

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSm6_RS19525 (PSm6_39170)	comA	4281893..4284115 (+)	2223	WP_265167999.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PSm6_RS19530 (PSm6_39180)	exbB	4284188..4284823 (+)	636	WP_031287691.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PSm6_RS19535 (PSm6_39190)	-	4284820..4285260 (+)	441	WP_021219508.1	biopolymer transporter ExbD	-
PSm6_RS19540 (PSm6_39200)	lpxK	4285260..4286264 (+)	1005	WP_021219507.1	tetraacyldisaccharide 4'-kinase	-
PSm6_RS19545 (PSm6_39210)	-	4286306..4286491 (+)	186	WP_021219506.1	Trm112 family protein	-
PSm6_RS19550 (PSm6_39220)	kdsB	4286491..4287255 (+)	765	WP_021219505.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PSm6_RS19555 (PSm6_39230)	-	4287255..4287713 (+)	459	WP_021219504.1	low molecular weight protein-tyrosine-phosphatase	-
PSm6_RS19560 (PSm6_39240)	murB	4287710..4288729 (+)	1020	WP_265168000.1	UDP-N-acetylmuramate dehydrogenase	-
PSm6_RS19565 (PSm6_39260)	rne	4288901..4291993 (-)	3093	WP_265168002.1	ribonuclease E	-
PSm6_RS19570 (PSm6_39270)	rluC	4292563..4293516 (+)	954	WP_265168003.1	23S rRNA pseudouridine(955/2504/2580) synthase RluC	-
PSm6_RS19575 (PSm6_39280)	-	4293509..4294204 (+)	696	WP_265168004.1	HAD-IA family hydrolase	-
PSm6_RS19580 (PSm6_39290)	sppA	4294194..4295177 (+)	984	WP_265168005.1	signal peptide peptidase SppA	-
PSm6_RS19585 (PSm6_39300)	-	4295231..4295809 (-)	579	WP_265168006.1	nucleoside triphosphate pyrophosphatase	-
PSm6_RS19590	-	4295917..4296444 (+)	528	WP_021217612.1	YceD family protein	-

Sequence

Protein

• Length: 740 a.a.
• Molecular weight: 79257.71 Da
• Isoelectric Point: 10.3590

>NTDB_id=81218 PSm6_RS19525 WP_265167999.1 4281893..4284115(+) (comA) [Pseudomonas solani strain Sm006]
MTGRLVALACGLASLRFMPGLPTGGWLLAAAVLGGVLLFTRLRLPGLFLLGGAWACFFAQQALDDRLAMALDGETRWLQG
QVVGLPQRGGGVVRFELEDAVAPGLRLPQRMRLSWYGGPEVRGGERWRLAVTLKRPRGLVNPHAFDYEAWLLARHTGATG
SVKAGEPLQRGSGPAAWRDRVRQGIESVPAHGRNGGIAALVLGDGSGIDSADWQLLLNTGTVHLMVISGQHIALLAAVLY
GAVALLARFGIWPRRLPWLPCACALAFVGSLGYGLLAGFDVPVQRSCLMTAIALLWRLRFRHLGVLRPLLVAFCVVLAAD
PLASLQAGFWLSFGAVALLVLIFAGRLGVPPWWRSWWRAQWTMGLALSPLLLAMALPISLSGPLANLIAVPWVSLVSVPL
SLLGAALQGVPGLGAGLLWLAGGSLELLFRLLGWIAEWIPAWQATAVPVWAWLLGILGCLLLIVPTGMPVRALGVALLLP
TLFPPVERPAWGRADIWLLDVGQGLSVLVRTREHALLYDAGARRGDFDMGERVVLPSLLGLGVRRLDQMLLSHADNDHAG
GAGAVMRGMPVARVVSGEPERLPASLGAEACRDQAWEWDGVRLRTWHWEAARTGNDRSCVLSVEARGERIHLTGDIGAQA
EAAWIASGEPLPADWLLAPHHGSASSSSAALIGAVAPRGALITRGSHNAFGHPHPTVIARYRAAGAAIHDTAESGALLIR
LGERDEVRGLRTQARFWREK

Nucleotide

• Length: 2223 bp

>NTDB_id=81218 PSm6_RS19525 WP_265167999.1 4281893..4284115(+) (comA) [Pseudomonas solani strain Sm006]
ATGACGGGGAGGTTGGTTGCGCTGGCCTGCGGGTTGGCCTCGCTGCGTTTCATGCCGGGGTTGCCGACGGGCGGCTGGCT
TCTGGCGGCGGCGGTGCTGGGCGGCGTTCTTCTATTCACACGGCTACGGCTGCCGGGGCTGTTCCTCCTGGGCGGCGCCT
GGGCCTGCTTCTTTGCCCAGCAGGCCCTGGATGATCGCCTGGCCATGGCCCTGGATGGCGAGACTCGCTGGCTGCAAGGG
CAGGTTGTCGGCCTGCCGCAGCGGGGCGGTGGGGTGGTGCGTTTCGAGTTGGAGGATGCCGTCGCCCCCGGATTGCGCTT
GCCGCAGCGCATGCGCCTGTCCTGGTATGGCGGGCCCGAGGTGCGCGGGGGCGAGCGTTGGCGCCTGGCGGTGACCCTGA
AGCGCCCCCGGGGCCTGGTGAACCCTCACGCGTTCGACTACGAAGCCTGGCTGCTGGCCCGCCATACCGGCGCCACCGGC
TCGGTGAAGGCGGGCGAGCCGTTGCAACGGGGCAGTGGCCCGGCTGCCTGGCGTGACCGCGTGCGCCAGGGCATAGAAAG
TGTGCCCGCCCATGGTCGCAACGGCGGTATCGCCGCGCTGGTGCTGGGAGATGGCTCGGGGATCGACAGTGCCGATTGGC
AGTTGCTGCTGAACACCGGGACGGTGCACCTGATGGTGATTTCCGGCCAGCACATTGCCTTGCTCGCGGCGGTGCTGTAC
GGAGCTGTGGCGTTGCTGGCCCGGTTCGGCATTTGGCCCCGACGCCTGCCGTGGTTGCCTTGTGCCTGTGCGCTGGCCTT
CGTCGGCTCGCTGGGTTACGGACTCCTCGCCGGCTTCGACGTGCCGGTGCAGCGCTCCTGCCTGATGACCGCCATCGCGC
TGCTGTGGCGCCTGCGCTTTCGTCACCTGGGCGTGCTGCGCCCGTTGCTGGTGGCCTTCTGCGTGGTGCTGGCGGCCGAT
CCGCTGGCTTCGCTGCAGGCGGGGTTCTGGTTGTCCTTCGGGGCCGTGGCATTGCTGGTGCTGATCTTCGCCGGGCGCCT
GGGCGTGCCGCCCTGGTGGCGCAGTTGGTGGCGCGCGCAATGGACCATGGGCCTGGCGCTGTCGCCCTTGCTGCTGGCCA
TGGCCCTGCCCATCAGCCTGAGCGGCCCGCTGGCCAACCTGATTGCGGTGCCCTGGGTCAGCCTGGTCTCGGTGCCGCTG
TCTTTATTAGGCGCGGCCCTGCAGGGTGTGCCGGGTCTTGGGGCGGGGCTGCTGTGGTTGGCGGGTGGGTCGCTGGAACT
GTTGTTCCGCTTGCTGGGCTGGATAGCGGAATGGATTCCCGCCTGGCAGGCGACCGCCGTTCCCGTCTGGGCCTGGCTGC
TGGGCATACTCGGTTGCCTGCTGCTGATCGTGCCGACCGGGATGCCGGTGCGGGCTTTGGGGGTGGCGTTGTTGTTGCCA
ACGCTGTTTCCGCCGGTGGAGCGCCCGGCCTGGGGGCGGGCGGATATCTGGTTGCTGGATGTGGGGCAGGGGCTGTCGGT
GCTGGTGCGCACGCGGGAGCACGCGCTGCTCTACGACGCTGGCGCGCGGCGGGGCGATTTCGACATGGGCGAGCGCGTGG
TGCTGCCCAGCCTGCTGGGGCTGGGTGTGCGGCGCCTGGACCAGATGCTCCTCAGCCATGCCGACAACGACCACGCGGGT
GGCGCCGGTGCCGTGATGCGTGGCATGCCGGTGGCACGGGTGGTGAGCGGCGAGCCGGAGCGCCTGCCGGCCAGCCTGGG
GGCCGAGGCCTGCCGTGACCAGGCCTGGGAATGGGACGGCGTGCGCCTGCGGACCTGGCACTGGGAGGCTGCGCGCACGG
GCAACGACCGCTCCTGCGTGCTCAGTGTGGAGGCGCGGGGCGAGCGCATTCACTTGACCGGCGATATCGGCGCCCAGGCC
GAAGCCGCCTGGATCGCCAGTGGTGAGCCCTTGCCCGCCGATTGGCTGCTGGCACCTCACCATGGCAGCGCCAGCTCTTC
ATCGGCGGCGCTCATTGGCGCGGTGGCTCCCCGTGGTGCGCTGATCACCCGGGGCAGCCACAACGCTTTCGGCCATCCGC
ACCCGACCGTGATCGCCCGTTACCGGGCGGCGGGCGCTGCAATCCACGACACGGCGGAGTCCGGTGCACTGCTGATCCGC
CTTGGTGAACGTGACGAGGTGCGTGGACTGCGGACCCAGGCACGTTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (200-465)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-682)

• Domain of unknown function (DUF4131) (DUF4131) (20-166)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.028	97.297	0.623
comA	Ralstonia pseudosolanacearum GMI1000	36.015	100	0.381