Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   P9J63_RS02960 Genome accession   NZ_CP121375
Coordinates   623603..624013 (+) Length   136 a.a.
NCBI ID   WP_032036240.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LRT     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 618603..629013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9J63_RS02945 (P9J63_02945) - 619592..621898 (+) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  P9J63_RS02950 (P9J63_02950) - 621943..622716 (-) 774 WP_032036236.1 SDR family oxidoreductase -
  P9J63_RS02955 (P9J63_02955) mazG 622828..623634 (+) 807 WP_032036238.1 nucleoside triphosphate pyrophosphohydrolase -
  P9J63_RS02960 (P9J63_02960) comEA 623603..624013 (+) 411 WP_032036240.1 ComEA family DNA-binding protein Machinery gene
  P9J63_RS02965 (P9J63_02965) pcnB 624140..625603 (+) 1464 WP_032036243.1 polynucleotide adenylyltransferase PcnB -
  P9J63_RS02970 (P9J63_02970) folK 625600..626082 (+) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  P9J63_RS02975 (P9J63_02975) panB 626128..626937 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  P9J63_RS02980 (P9J63_02980) panC 626941..627789 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  P9J63_RS02985 (P9J63_02985) rapZ 627812..628663 (+) 852 WP_000821671.1 RNase adapter RapZ -
  P9J63_RS02990 (P9J63_02990) - 628660..628929 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15589.91 Da        Isoelectric Point: 10.3833

>NTDB_id=812030 P9J63_RS02960 WP_032036240.1 623603..624013(+) (comEA) [Acinetobacter baumannii strain LRT]
MRYSMRLWKNKCFILMMLCLGVISPSVFAQSFDQNFQEWKAKQQMYDQKLNVSKPSHSYGSKNSYTKSSNDSTGQIHLNQ
ATVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=812030 P9J63_RS02960 WP_032036240.1 623603..624013(+) (comEA) [Acinetobacter baumannii strain LRT]
ATGCGATACAGCATGAGACTTTGGAAAAATAAGTGTTTTATTTTAATGATGTTGTGCTTAGGGGTAATTTCGCCTTCGGT
TTTTGCTCAATCTTTTGACCAGAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTACGACCAAAAGTTAAACGTCTCTA
AGCCTTCTCATTCTTATGGTTCTAAAAATTCTTATACTAAGAGTTCTAATGACTCTACAGGGCAAATTCACTTGAATCAG
GCCACTGTAAATGAGTTTCAGCAGTTAAAAGGCGTCGGTGAGAAAAAAGCGCAAGCGATTGTAGAATATAGACAGAAGAA
CGGAAGTTTTAAAAATATTGACGAAATTAAAAATGTCAAAGGAATAGGACCAGCTATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

88.971

100

0.89
  comEA Acinetobacter baumannii D1279779

87.5

100

0.875
  comEA Acinetobacter baylyi ADP1

48.649

81.618

0.397