Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   P9J61_RS13825 Genome accession   NZ_CP121370
Coordinates   2805302..2807734 (-) Length   810 a.a.
NCBI ID   WP_032036374.1    Uniprot ID   A0AB73FEK7
Organism   Acinetobacter baumannii strain LRB     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2793994..2808506 2805302..2807734 within 0


Gene organization within MGE regions


Location: 2793994..2808506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9J61_RS13765 (P9J61_13765) - 2793994..2795159 (+) 1166 WP_085942227.1 IS3-like element ISAba22 family transposase -
  P9J61_RS13770 (P9J61_13770) - 2795197..2795343 (-) 147 Protein_2698 CSLREA domain-containing protein -
  P9J61_RS13775 (P9J61_13775) rbtA 2795358..2796932 (-) 1575 Protein_2699 rhombotarget A -
  P9J61_RS13780 (P9J61_13780) - 2796989..2797921 (+) 933 WP_001043692.1 IS5-like element ISAba13 family transposase -
  P9J61_RS13785 (P9J61_13785) - 2797975..2798259 (-) 285 Protein_2701 CSLREA domain-containing protein -
  P9J61_RS13790 (P9J61_13790) hda 2798577..2799275 (-) 699 WP_001249536.1 DnaA regulatory inactivator Hda -
  P9J61_RS13795 (P9J61_13795) cxpE 2799296..2800489 (-) 1194 WP_001153980.1 chloramphenicol efflux transporter CxpE -
  P9J61_RS13800 (P9J61_13800) purM 2800625..2801695 (+) 1071 WP_000071984.1 phosphoribosylformylglycinamidine cyclo-ligase -
  P9J61_RS13805 (P9J61_13805) purN 2801692..2802321 (+) 630 WP_000975532.1 phosphoribosylglycinamide formyltransferase -
  P9J61_RS13810 (P9J61_13810) - 2802385..2803194 (-) 810 WP_000114074.1 alpha/beta hydrolase -
  P9J61_RS13815 (P9J61_13815) sppA 2803213..2804229 (-) 1017 WP_001286615.1 signal peptide peptidase SppA -
  P9J61_RS13820 (P9J61_13820) - 2804366..2805349 (+) 984 WP_001984639.1 lysophospholipid acyltransferase family protein -
  P9J61_RS13825 (P9J61_13825) comA/comEC 2805302..2807734 (-) 2433 WP_032036374.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  P9J61_RS13830 (P9J61_13830) lolD 2807820..2808506 (-) 687 WP_005138187.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 92454.71 Da        Isoelectric Point: 8.7336

>NTDB_id=812001 P9J61_RS13825 WP_032036374.1 2805302..2807734(-) (comA/comEC) [Acinetobacter baumannii strain LRB]
MFKIILLGWIGGIALMGIDFPLIMQYEKVGEALLLLAFIFYLYKRPMFVDRPFLKAVFCLLGTTSLFMVGYHYAEKALIE
RLEQRETDTRNLNIIVYINRLSEEKDNKVQQTAQVLNLSKEPVNWLLYLKSNNQNLLKNNQNLELGHYYRISGKTRPAHS
YATPGAFDQEKWFIQRNIMSGFNVRYIEPLSLDEIYRLGYQQHLKEQQSFSNSFRLNIEKLRLTFRQILNSSSLQQKGLI
LALLTGDESLLSDETQLQFKQLGISHLLAISGPHVLIFAIMLSWACHQFISRYYPQIYLWKPKQVLMAVPCCLGVLIYTA
FVGFEIPALRTFLSVLIFIGFLLLKQPIKPFTLLVYSASLLLLMDPFSVFSAGFWLSYGACFILLRIYQTIAQLPEQHFL
SLSSKMIFMSKVLIESQGKIFIALSPLTLLFFQQISWVAPLTNIIAVPIVGSVIVPLNIMAACAWFVIKPFGNMLFHFND
MLLSILLSCLGLLEKLSLTLQGISLTPLSLLAISCAIIILFLPKGILPKTWGILCCLPLVIMNKTSQQIQLNILDVGQGQ
AIFLQHSEQNWLIDTGGSYDEKIFSIGQNVVVPFLRQQGVRQLDHVVLSHLDQDHSGAFPLIQQEIPVKQLISNEQLPND
LKQPFQYCHQGQQWHYPELDIQILWPKEKDLAFVASNQNQYSCVVYLQFKKVGGYQNFLIMGDAGWEAEYELLKDYPNLK
IDVLVLGHHGSKHSSAYDFLATLKPKLAIASAGFDNRYGHPSQQVIARLKALHIPLKSTVEQGTLSFVLENHKIVLHDRR
LDRLWLSRGF

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=812001 P9J61_RS13825 WP_032036374.1 2805302..2807734(-) (comA/comEC) [Acinetobacter baumannii strain LRB]
ATGTTTAAGATTATTCTATTGGGGTGGATTGGCGGTATTGCATTGATGGGAATAGATTTCCCTTTAATCATGCAATATGA
AAAAGTGGGCGAGGCTCTACTGTTACTTGCCTTTATTTTTTATCTTTATAAACGACCAATGTTCGTTGATCGACCATTTT
TAAAGGCAGTGTTTTGCTTATTAGGTACAACAAGTCTTTTTATGGTTGGTTACCACTATGCTGAAAAAGCACTGATTGAA
CGATTAGAACAAAGAGAAACGGATACCCGAAATCTCAACATTATTGTCTATATAAACCGTTTAAGTGAAGAAAAAGATAA
TAAGGTTCAACAAACTGCACAAGTTCTAAATCTTTCTAAAGAACCGGTGAATTGGTTGCTATATTTAAAAAGTAATAATC
AAAATTTATTAAAGAATAATCAGAATCTTGAATTAGGTCACTATTATCGAATATCTGGAAAAACAAGACCTGCGCATAGT
TATGCCACCCCAGGAGCTTTTGATCAGGAAAAGTGGTTTATTCAGCGAAATATTATGTCTGGTTTTAACGTGAGATATAT
TGAGCCTTTAAGTCTCGATGAAATCTATCGATTGGGCTATCAGCAACATTTAAAAGAACAACAGTCTTTTTCCAATAGTT
TTCGTTTAAATATAGAAAAACTTCGCTTAACTTTTAGGCAAATATTAAACAGCTCATCTCTACAGCAAAAGGGTTTAATT
TTAGCTTTGCTGACAGGTGATGAAAGCCTTTTATCAGATGAAACTCAACTACAGTTCAAACAATTAGGAATTAGTCATTT
ATTGGCGATCTCAGGCCCACATGTGCTCATTTTTGCCATTATGTTATCTTGGGCATGTCATCAATTTATTAGTCGTTATT
ATCCTCAAATTTATTTATGGAAACCGAAACAGGTTTTGATGGCTGTACCATGCTGCCTTGGCGTTCTAATTTATACTGCA
TTTGTAGGTTTCGAAATTCCTGCACTACGAACATTCCTATCAGTCCTTATATTTATTGGTTTTCTATTATTAAAACAACC
TATTAAACCTTTTACATTACTCGTATATAGCGCAAGTCTACTGTTGCTAATGGACCCGTTTAGTGTGTTTTCTGCAGGTT
TTTGGCTGTCTTATGGGGCATGCTTTATTTTATTAAGAATTTACCAAACTATAGCGCAGCTACCTGAGCAACATTTTTTG
AGTCTGAGTTCAAAAATGATTTTTATGAGTAAGGTATTAATTGAATCTCAAGGCAAAATATTTATTGCATTGAGCCCTTT
AACCTTACTTTTCTTTCAACAAATTTCTTGGGTTGCTCCATTAACCAATATTATTGCCGTGCCTATTGTTGGTAGTGTTA
TTGTCCCTTTAAACATCATGGCTGCTTGCGCATGGTTTGTAATAAAACCATTTGGAAATATGCTTTTTCATTTCAATGAT
ATGTTGCTCAGCATATTACTGAGTTGTTTGGGCTTATTAGAAAAACTCTCTTTAACATTACAAGGTATAAGCTTGACGCC
ACTGTCTTTATTAGCGATTAGTTGTGCCATTATTATTTTATTTTTACCTAAAGGAATTCTGCCCAAAACTTGGGGAATAT
TATGTTGTTTACCCTTAGTTATTATGAACAAAACGAGTCAGCAAATTCAGCTTAATATTTTAGATGTTGGACAGGGGCAA
GCCATTTTTTTACAACATTCCGAACAAAACTGGTTAATTGATACAGGCGGTTCTTACGATGAAAAAATATTTAGTATTGG
ACAAAATGTTGTAGTGCCTTTTCTACGTCAGCAAGGCGTAAGACAATTAGATCATGTTGTGCTATCCCATCTTGATCAAG
ACCATAGTGGCGCGTTTCCTCTTATTCAACAAGAGATTCCTGTAAAGCAGCTTATTTCGAATGAACAATTACCAAATGAT
TTAAAGCAACCATTCCAATATTGCCATCAAGGGCAACAATGGCATTATCCTGAGTTAGATATTCAAATTTTATGGCCTAA
AGAAAAAGATCTGGCTTTTGTTGCTTCTAACCAGAATCAATATTCTTGTGTTGTATATCTTCAATTTAAAAAAGTTGGTG
GTTACCAAAATTTTCTTATTATGGGCGATGCTGGATGGGAAGCTGAATACGAGTTATTAAAAGATTATCCTAACTTGAAG
ATAGATGTGTTAGTGCTAGGGCATCATGGAAGTAAGCACAGTTCGGCTTATGATTTCTTGGCGACCTTAAAACCTAAACT
GGCCATTGCATCGGCAGGGTTTGATAACCGTTATGGCCATCCTAGCCAACAAGTTATAGCACGTTTAAAAGCTCTACATA
TTCCGCTAAAAAGCACTGTGGAACAAGGGACCTTAAGTTTTGTGTTGGAAAATCACAAAATAGTTTTACATGACCGACGT
TTGGATAGGCTCTGGTTGAGTAGAGGTTTTTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(33-188)

Metallo-beta-lactamase superfamily (Lactamase_B)

(555-639)

Competence protein (Competence)

(243-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baumannii D1279779

99.136

100

0.991
  comA/comEC Acinetobacter baumannii strain A118

97.284

100

0.973
  comA/comEC Acinetobacter baylyi ADP1

50.062

100

0.501