Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P8R55_RS00160 Genome accession   NZ_CP121285
Coordinates   9216..9734 (+) Length   172 a.a.
NCBI ID   WP_407325395.1    Uniprot ID   -
Organism   Lactobacillus johnsonii strain L16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4216..14734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R55_RS00145 (P8R55_00145) gyrB 4232..6199 (+) 1968 WP_004898283.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  P8R55_RS00150 (P8R55_00150) gyrA 6210..8699 (+) 2490 WP_407325393.1 DNA gyrase subunit A -
  P8R55_RS00155 (P8R55_00155) rpsF 8886..9182 (+) 297 WP_004896331.1 30S ribosomal protein S6 -
  P8R55_RS00160 (P8R55_00160) ssb 9216..9734 (+) 519 WP_407325395.1 single-stranded DNA-binding protein Machinery gene
  P8R55_RS00165 (P8R55_00165) rpsR 9759..9995 (+) 237 WP_003649728.1 30S ribosomal protein S18 -
  P8R55_RS00170 (P8R55_00170) - 10089..11006 (+) 918 WP_011161252.1 magnesium transporter CorA family protein -
  P8R55_RS00175 (P8R55_00175) - 11114..13132 (+) 2019 WP_407325396.1 DHH family phosphoesterase -
  P8R55_RS00180 (P8R55_00180) rplI 13144..13599 (+) 456 WP_003651632.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18630.35 Da        Isoelectric Point: 4.7531

>NTDB_id=811598 P8R55_RS00160 WP_407325395.1 9216..9734(+) (ssb) [Lactobacillus johnsonii strain L16]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFINCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGSNFAPQGGNAPSTNNFGGSSAPSMNNAPASGESNKPQDPFADSG
STIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=811598 P8R55_RS00160 WP_407325395.1 9216..9734(+) (ssb) [Lactobacillus johnsonii strain L16]
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATACACCAATAGTCAAGGTGAACGTGGTGCTGATTTCATCAACTGTGTAATTT
GGCGTAAAGCAGCAGAAAATTTTGCTAACTTTACTTCAAAGGGTTCATTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTACGATGATAAGGACGGTAAGAGAGTATACGTGACTGAAGTCATTGTTGATAATTTCTCTTTACTAGAATCACGTCG
TGATCGTGAAAATCGTCAGACTAATGGTAGCAATTTTGCTCCACAAGGAGGAAATGCTCCAAGTACCAATAACTTTGGTG
GATCAAGTGCACCAAGCATGAATAATGCTCCTGCTAGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCAGGT
AGCACCATTGACATCTCAGATGATGATCTCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.069

100

0.628
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

100

0.512
  ssb Glaesserella parasuis strain SC1401

33.871

100

0.366