Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   P8R49_RS12795 Genome accession   NZ_CP121266
Coordinates   2374547..2374978 (-) Length   143 a.a.
NCBI ID   WP_014480256.1    Uniprot ID   A0A0D1KRY1
Organism   Bacillus subtilis strain 107105     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2369547..2379978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R49_RS12745 (P8R49_12745) sinI 2369741..2369914 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  P8R49_RS12750 (P8R49_12750) sinR 2369948..2370283 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  P8R49_RS12755 (P8R49_12755) tasA 2370376..2371161 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  P8R49_RS12760 (P8R49_12760) sipW 2371225..2371797 (-) 573 WP_003230181.1 signal peptidase I SipW -
  P8R49_RS12765 (P8R49_12765) tapA 2371781..2372542 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  P8R49_RS12770 (P8R49_12770) yqzG 2372814..2373140 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  P8R49_RS12775 (P8R49_12775) spoIITA 2373182..2373361 (-) 180 WP_014480252.1 YqzE family protein -
  P8R49_RS12780 (P8R49_12780) comGG 2373432..2373806 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  P8R49_RS12785 (P8R49_12785) comGF 2373807..2374190 (-) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  P8R49_RS12790 (P8R49_12790) comGE 2374216..2374563 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  P8R49_RS12795 (P8R49_12795) comGD 2374547..2374978 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  P8R49_RS12800 (P8R49_12800) comGC 2374968..2375264 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  P8R49_RS12805 (P8R49_12805) comGB 2375278..2376315 (-) 1038 WP_031600685.1 comG operon protein ComGB Machinery gene
  P8R49_RS12810 (P8R49_12810) comGA 2376302..2377372 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  P8R49_RS12815 (P8R49_12815) - 2377584..2377781 (-) 198 WP_014480259.1 CBS domain-containing protein -
  P8R49_RS12820 (P8R49_12820) corA 2377783..2378736 (-) 954 WP_014480260.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16091.75 Da        Isoelectric Point: 10.1947

>NTDB_id=811519 P8R49_RS12795 WP_014480256.1 2374547..2374978(-) (comGD) [Bacillus subtilis strain 107105]
MNIKLNEEKGFTLLESLLVLSLASILLIAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=811519 P8R49_RS12795 WP_014480256.1 2374547..2374978(-) (comGD) [Bacillus subtilis strain 107105]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GATTGCCGTCTTCACCACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KRY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

98.601

100

0.986