Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   P8R49_RS12750 Genome accession   NZ_CP121266
Coordinates   2369948..2370283 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain 107105     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2364948..2375283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R49_RS12730 (P8R49_12730) gcvT 2365540..2366628 (-) 1089 WP_014480247.1 glycine cleavage system aminomethyltransferase GcvT -
  P8R49_RS12735 (P8R49_12735) hepAA 2367070..2368743 (+) 1674 WP_014480248.1 SNF2-related protein -
  P8R49_RS12740 (P8R49_12740) yqhG 2368764..2369558 (+) 795 WP_014480249.1 YqhG family protein -
  P8R49_RS12745 (P8R49_12745) sinI 2369741..2369914 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  P8R49_RS12750 (P8R49_12750) sinR 2369948..2370283 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  P8R49_RS12755 (P8R49_12755) tasA 2370376..2371161 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  P8R49_RS12760 (P8R49_12760) sipW 2371225..2371797 (-) 573 WP_003230181.1 signal peptidase I SipW -
  P8R49_RS12765 (P8R49_12765) tapA 2371781..2372542 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  P8R49_RS12770 (P8R49_12770) yqzG 2372814..2373140 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  P8R49_RS12775 (P8R49_12775) spoIITA 2373182..2373361 (-) 180 WP_014480252.1 YqzE family protein -
  P8R49_RS12780 (P8R49_12780) comGG 2373432..2373806 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  P8R49_RS12785 (P8R49_12785) comGF 2373807..2374190 (-) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  P8R49_RS12790 (P8R49_12790) comGE 2374216..2374563 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  P8R49_RS12795 (P8R49_12795) comGD 2374547..2374978 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  P8R49_RS12800 (P8R49_12800) comGC 2374968..2375264 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=811515 P8R49_RS12750 WP_003226345.1 2369948..2370283(+) (sinR) [Bacillus subtilis strain 107105]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=811515 P8R49_RS12750 WP_003226345.1 2369948..2370283(+) (sinR) [Bacillus subtilis strain 107105]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1