Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   P8632_RS08425 Genome accession   NZ_CP121263
Coordinates   1638348..1639220 (-) Length   290 a.a.
NCBI ID   WP_064206712.1    Uniprot ID   -
Organism   Staphylococcus hominis strain FSEL1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1633348..1644220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8632_RS08410 (P8632_08400) xerC 1633809..1634702 (-) 894 WP_002448815.1 tyrosine recombinase XerC -
  P8632_RS08415 (P8632_08405) trmFO 1634808..1636115 (-) 1308 WP_002448834.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P8632_RS08420 (P8632_08410) topA 1636140..1638209 (-) 2070 WP_049418187.1 type I DNA topoisomerase -
  P8632_RS08425 (P8632_08415) dprA 1638348..1639220 (-) 873 WP_064206712.1 DNA-processing protein DprA Machinery gene
  P8632_RS08430 (P8632_08420) sucD 1639478..1640383 (-) 906 WP_002448725.1 succinate--CoA ligase subunit alpha -
  P8632_RS08435 (P8632_08425) sucC 1640405..1641571 (-) 1167 WP_002455423.1 ADP-forming succinate--CoA ligase subunit beta -
  P8632_RS08440 (P8632_08430) - 1641699..1642466 (-) 768 WP_002455424.1 ribonuclease HII -
  P8632_RS08445 (P8632_08435) ylqF 1642450..1643334 (-) 885 WP_049336491.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33563.65 Da        Isoelectric Point: 8.9933

>NTDB_id=811467 P8632_RS08425 WP_064206712.1 1638348..1639220(-) (dprA) [Staphylococcus hominis strain FSEL1]
MNDFILLKMRWIGYTTQHIHHLLNVFPKFFNVNEHVQFEMINEWESLYLKKKRFTQLEEISYDYIQTQLSRSQVNYVTSF
SSQYPPLLKTIYDYPFILFYRGNIHLLSSTYTLGVVGSREATHYSKCALDYLFSHFINIPLTIVSGLAKGADSIAHQFAL
KHHLPTIAVLGFGHLNHYPKETRKLRNIIEETGLVISEYPPLTKINKYQFPERNRLISGLSRGVLITEAKIKSGSQITID
CALDQNRNVYVLPGSMFNPLTKGNLLRAQEGAMIVSEAEDILYDYRFLNN

Nucleotide


Download         Length: 873 bp        

>NTDB_id=811467 P8632_RS08425 WP_064206712.1 1638348..1639220(-) (dprA) [Staphylococcus hominis strain FSEL1]
ATGAATGATTTTATTTTATTAAAAATGAGATGGATAGGGTATACGACCCAACATATTCATCATTTACTCAATGTATTTCC
AAAATTTTTCAATGTTAATGAACATGTTCAATTTGAAATGATTAATGAATGGGAATCTCTATATTTAAAAAAGAAGCGTT
TTACTCAATTAGAAGAGATTTCTTACGATTACATTCAAACTCAACTTTCTAGATCTCAGGTTAACTATGTTACTTCATTT
TCTTCTCAATATCCTCCATTGCTTAAAACTATTTACGACTATCCTTTTATATTATTTTATCGTGGAAATATACATTTATT
ATCATCTACATATACTTTAGGTGTTGTAGGTTCACGTGAGGCCACACATTATTCTAAGTGTGCACTAGATTATCTATTTT
CTCACTTTATAAATATTCCACTAACGATTGTATCCGGTTTAGCGAAAGGTGCTGATAGCATAGCTCATCAATTCGCATTA
AAACATCATCTCCCAACTATTGCAGTTCTAGGTTTTGGTCATTTAAATCACTATCCAAAGGAAACCCGAAAGTTACGTAA
TATAATTGAAGAAACTGGTTTAGTCATAAGTGAATATCCTCCTTTAACAAAAATAAACAAATATCAATTCCCTGAAAGAA
ATCGTCTGATAAGCGGGTTGTCTCGTGGTGTATTAATTACTGAAGCTAAAATTAAAAGTGGTAGTCAAATTACAATAGAT
TGTGCTTTAGATCAAAATAGAAATGTTTATGTATTACCTGGATCAATGTTTAACCCTTTGACAAAAGGAAATTTATTACG
TGCTCAAGAAGGTGCAATGATTGTTTCAGAAGCAGAAGATATATTATATGATTATCGTTTTTTAAACAATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

54.325

99.655

0.541
  dprA Staphylococcus aureus N315

54.167

99.31

0.538
  dprA Streptococcus mutans UA159

36.77

100

0.369