Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   P7Y79_RS07070 Genome accession   NZ_CP121207
Coordinates   1462820..1464118 (-) Length   432 a.a.
NCBI ID   WP_278007355.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_77-47     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1457820..1469118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7Y79_RS07060 (P7Y79_07060) raiA 1461533..1462081 (-) 549 WP_039695883.1 ribosome-associated translation inhibitor RaiA -
  P7Y79_RS07065 (P7Y79_07065) - 1462158..1462820 (-) 663 WP_278007354.1 ComF family protein -
  P7Y79_RS07070 (P7Y79_07070) comFA/cflA 1462820..1464118 (-) 1299 WP_278007355.1 DEAD/DEAH box helicase Machinery gene
  P7Y79_RS07075 (P7Y79_07075) - 1464173..1464799 (+) 627 WP_278007356.1 YigZ family protein -
  P7Y79_RS07080 (P7Y79_07080) cysK 1464899..1465828 (+) 930 WP_157628771.1 cysteine synthase A -
  P7Y79_RS07085 (P7Y79_07085) - 1465926..1466282 (-) 357 WP_020916316.1 S1 RNA-binding domain-containing protein -
  P7Y79_RS07090 (P7Y79_07090) - 1466282..1467682 (-) 1401 WP_081341909.1 Cof-type HAD-IIB family hydrolase -
  P7Y79_RS07095 (P7Y79_07095) - 1467807..1468451 (-) 645 WP_074626744.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 432 a.a.        Molecular weight: 49179.46 Da        Isoelectric Point: 9.8951

>NTDB_id=811112 P7Y79_RS07070 WP_278007355.1 1462820..1464118(-) (comFA/cflA) [Streptococcus ruminicola strain CNU_77-47]
MTELNDYYGRIFTESQLTDDLKKEAKVLPSIKREKGQMICNRCGSVMEANQMLQTGRIYCRECLVFGRNTSDSNLYYFPQ
KPFTKTQSLNWQGKLTSYQDEVSKGMLKGITEKQDLLIHAVTGAGKTEMIYQSLAKVIDNGGSVCLASPRIDVCLELYKR
LSRDFSCPITLLHGDSEPYKRSPLVIATTHQLLKFYRAFDLLIIDEVDAFPFVDNKMLYHAVNQSLKDDGVKLFLTATST
DELDKKVKKGELTKLHLARRFHANPLVVPKMVWLSKVLISMKKKKFPPKLISLLKKQRQSQFPLLIFFPNIEQGREFTSI
LQTIFPDERIGFVSSKTENRLELVEEFRQGKLTILVTTTILERGVTFPCVDVFVLLANHKLYSKSALVQISGRVGRAAER
PTGELLFLHDGVTKAMKKAISEIKEMNRKGGF

Nucleotide


Download         Length: 1299 bp        

>NTDB_id=811112 P7Y79_RS07070 WP_278007355.1 1462820..1464118(-) (comFA/cflA) [Streptococcus ruminicola strain CNU_77-47]
ATGACAGAGTTGAATGATTACTATGGAAGAATTTTTACAGAAAGTCAATTAACAGATGACTTGAAAAAAGAAGCAAAAGT
CCTTCCTTCGATTAAAAGAGAAAAAGGGCAAATGATTTGCAATCGCTGTGGAAGTGTAATGGAAGCAAATCAAATGTTGC
AAACTGGTCGCATTTATTGTAGAGAGTGTTTAGTTTTTGGGCGAAATACTAGTGATTCTAATCTTTATTATTTCCCTCAG
AAGCCTTTTACAAAGACTCAGTCGTTAAATTGGCAAGGAAAACTAACTTCTTATCAAGATGAAGTTTCTAAAGGCATGCT
TAAAGGTATTACAGAAAAACAAGATTTATTGATTCACGCTGTGACTGGTGCTGGTAAAACTGAAATGATTTATCAATCTT
TAGCTAAAGTTATTGATAATGGAGGAAGTGTCTGCTTAGCAAGCCCAAGGATTGATGTTTGTTTAGAACTTTATAAACGA
TTATCAAGAGATTTTTCTTGCCCGATTACGCTTTTACATGGTGATTCTGAGCCGTATAAACGCTCTCCGTTGGTAATTGC
AACGACCCATCAGCTTTTAAAATTTTACCGAGCTTTTGATTTATTAATCATCGACGAAGTTGATGCCTTTCCCTTTGTTG
ATAATAAAATGCTTTATCACGCGGTCAACCAATCCTTAAAAGATGATGGCGTTAAACTCTTTTTAACAGCGACTTCGACT
GATGAACTTGATAAAAAGGTGAAAAAAGGAGAGTTGACAAAATTGCATTTAGCAAGACGTTTTCATGCCAATCCTTTGGT
AGTCCCCAAAATGGTTTGGTTAAGCAAAGTGCTAATTTCAATGAAAAAGAAAAAATTTCCTCCTAAACTAATCTCTCTTT
TAAAAAAACAAAGGCAAAGTCAATTTCCGCTTCTTATCTTTTTTCCGAATATTGAACAAGGTAGAGAATTTACAAGTATC
TTACAAACTATTTTTCCAGATGAAAGGATAGGATTTGTGTCAAGTAAAACCGAAAATCGTCTGGAATTGGTAGAAGAATT
TAGACAAGGAAAATTAACCATACTAGTGACAACAACCATTCTAGAACGTGGGGTAACCTTTCCTTGTGTCGATGTTTTTG
TTCTACTTGCAAATCATAAATTGTACAGCAAAAGTGCACTTGTACAGATATCAGGACGAGTTGGACGAGCAGCCGAGAGA
CCGACAGGAGAGTTATTGTTCTTGCATGATGGCGTAACAAAAGCTATGAAAAAAGCTATTTCTGAAATAAAAGAAATGAA
TCGTAAAGGAGGATTTTAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(97-244)

Helicase conserved C-terminal domain (Helicase_C)

(289-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae TIGR4

60.656

98.843

0.6
  comFA/cflA Streptococcus pneumoniae Rx1

60.656

98.843

0.6
  comFA/cflA Streptococcus pneumoniae D39

60.656

98.843

0.6
  comFA/cflA Streptococcus pneumoniae R6

60.656

98.843

0.6
  comFA/cflA Streptococcus mitis NCTC 12261

60.422

98.843

0.597
  comFA/cflA Streptococcus mitis SK321

59.953

98.843

0.593
  comFA Lactococcus lactis subsp. cremoris KW2

50

98.148

0.491
  comFA Latilactobacillus sakei subsp. sakei 23K

38.303

100

0.387